| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2033 |
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| Symbol | ruvA |
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| ID | 5614217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2460697 |
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| End bp | 2461314 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932919 |
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| Product | Holliday junction DNA helicase RuvA |
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| Protein accession | YP_001473770 |
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| Protein GI | 157375170 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0632] Holliday junction resolvasome, DNA-binding subunit |
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| TIGRFAM ID | [TIGR00084] Holliday junction DNA helicase, RuvA subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00030841 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTGGTC GCTTAAGAGG GTTACTTGTT GAGAAGCAAG CACCTGAAAT TTTACTTGAA
GTGCAGGGGT TAGGTTACGA AGTTCAGATG CCGTTAACCA GCTTTTATGA ACTCCCTGAG
CTCAATCAGG AAGCCATTGT ATATACCCAT TTCGTAGTGC GTGAAGATGC TCAACTACTT
TACGGTTTTA TCACCAAACA GGAACGCGCA CTTTTTCGGT TACTGATAAA AACCAATGGT
GTCGGGCCAA AGCTGGCTCT GACCATACTC TCAGGAATGA CCGCAAGTGA ATTTGTTGCC
TGCGTCGAAC GTGATGATAT TGCGACCTTA GTTAAGTTGC CCGGTGTGGG TAAGAAAACA
GCCGAGAGAT TGCTAGTAGA GATGCGTGAT AAGCTTAAGA GTCTGATGGA GGCATCGGCA
GGCTCTGAGC GTGAATTTAT GCTTAAGTCT AATTACACAC CCGCACCTGT GATTAATACC
GCAGAAGAAG ATGCCATTGC CGCACTATTG TCTCTCGGGT ATAAGCCTGC ACAGGCAAGT
AAGGCCGTCT CAGCGGTATA TCAAGATGGC ATGGACTCAG AGACATTGAT TAAATCGTCA
CTGAAATCGA TGTTATAA
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| Protein sequence | MIGRLRGLLV EKQAPEILLE VQGLGYEVQM PLTSFYELPE LNQEAIVYTH FVVREDAQLL
YGFITKQERA LFRLLIKTNG VGPKLALTIL SGMTASEFVA CVERDDIATL VKLPGVGKKT
AERLLVEMRD KLKSLMEASA GSEREFMLKS NYTPAPVINT AEEDAIAALL SLGYKPAQAS
KAVSAVYQDG MDSETLIKSS LKSML
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