| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2031 |
|---|
| Symbol | |
|---|
| ID | 5613972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2459429 |
|---|
| End bp | 2460175 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640932917 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473768 |
|---|
| Protein GI | 157375168 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0217] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0016605 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGTC ATAGTAAATG GGACAACATC AAGCATCGCA AAGCGGCGCA AGATGCAAAA
CGCGGCAAGC TTTTTACAAA ATTCATCCGT GAACTTACTG TTGCTGCCCG TGAAGGTGGA
TCGGATGTCG ATTCTAACCC TCGCCTTCGT GCCGCTATTG ATAAAGCCTT ATCTAATAAC
ATGACGCGTG ACACCGTTGA GCGTGCGATT AAACGTGGTG CCGGCGAACT CGATGGCCAA
GTATTGGAAA CCATTATGTA TGAAGGCTAT GGCCCAGGCG GTACAGCTGT GATGGTTGAA
ACCATGACAG ACAACAAAAA CCGTACTGTA TCGGGTGTTC GTAATGCATT CAGTAAGTCG
GGGGGCAATT TAGGTACAGA TGGTTCAGTA TCTTATCTCT TCGAGAAACG AGGCGTTATC
TCCTACGCTG AAGGCGCAGA TGAAGACACC ATTATGGATG CAGCGCTCGA TGCCGGTGCC
GATGATGTAG TCACTCATGA AGATGGCTCG ATTGATGTGT TTACCACACC CGAGGACTTT
GGCGCGGTTA AAGATGCGCT GGATGCGACC GAGCTTGTGG CTATCAATGC CGAAGTGACG
ATGATCCCAT CGACGAAAGC CGAACTCGAT GCCAGCACCG CACCCAAATT TATTCGCTTA
ATCGATAACC TCGAAGATCA TGATGATGTT CAAGAGGTAT ACCATAATGC AGATATCTCC
GATGAGATCA TGGAATCCTT AGATTAA
|
|---|
| Protein sequence | MAGHSKWDNI KHRKAAQDAK RGKLFTKFIR ELTVAAREGG SDVDSNPRLR AAIDKALSNN
MTRDTVERAI KRGAGELDGQ VLETIMYEGY GPGGTAVMVE TMTDNKNRTV SGVRNAFSKS
GGNLGTDGSV SYLFEKRGVI SYAEGADEDT IMDAALDAGA DDVVTHEDGS IDVFTTPEDF
GAVKDALDAT ELVAINAEVT MIPSTKAELD ASTAPKFIRL IDNLEDHDDV QEVYHNADIS
DEIMESLD
|
|---|
| |