| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2029 |
|---|
| Symbol | |
|---|
| ID | 5613970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2454584 |
|---|
| End bp | 2457382 |
|---|
| Gene Length | 2799 bp |
|---|
| Protein Length | 932 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640932915 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001473766 |
|---|
| Protein GI | 157375166 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0571217 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAATCAT TTATTAAGCT TCTGTCATTT TTGCTTGTCT GCTTTTTTGC CTCCGGACTC
TATGCCGATG AGGGCAAACC GTTGGTCTTA GTAATGGGAG AAGATAGTTA CCCTTACCAG
TTTGTGGATG AGAAAGGTGA GCCCCACGGA ATTCTTATTG ACTTGTGGAA AGCCTGGAGC
CAACAAACGG ATACTGAAGT CGTTTTTGTA TCACGGCATT GGCATGACTC ACTCAAACAA
CTCTCTCAGG GAGATGCCGA TGCTCATGTT GGTTTAGCTC AGACTTCAGT GCGTTCAGAG
ATATTTGATT TCGCTGGACA GATATCCCAA GTCAGAACCT ACCTTTATCT GCATAAAAGC
CTCTCCGACA GAACATCATT TTCAGATCTT ATCCCCTATC AAATTGGTAT AGTGTCAGGT
TCCTCTCACG AAGCCGAATT GCTTGCTCTT GAGCCTAGAT TATCCTTTAA ACGCTACAAC
AGCCGTCACA GCTTATTAAA AGGGGTAATT GAAGGAGAGG TGCATGTTTT TGCTGGAATG
GAAGGCTACC TTAAAGACAA TAACCTGAAT CGACAGGTCG TCAGCCTTTT TCCCATAAAG
AACCGACTCT TGATAAAAGA GTCGCCTCTG CATCCGGCTG TTATCAAGTC AGATTTAAAG
ACTGTAGATA AGATAAACTT AGGATTTGCG GCAATTTCCA GTAAGCGTTT TGCTGCGATA
GAGGAACGTT GGCTTGGCAT TAATCAGCAA AAAAGAGGGA TAACGGTTGC GACAACACTC
AATATTGAAC CTTTCGTCTC TCTAGGAGGT GATGGGCTGC CCCATGGTTT GTATGTGGAT
ATTTGGCATC TGTGGTCTGA AAAAACGGGG ATCCCGGTCT TCTTCTCGAC AGGAGATATG
AACAGCTCAC TCGATGATGT TCGAATGGGC AGCGCCGATG TCCATATTGG CTATCCAGAG
AGTGACGCGC TTAAGAGTGG CCTACTGAGA AGCCAATTAT TGTACAAGGT AAAAAGTCGA
TTATTTAGTT TCGGTCATTC AATAGATAAC TTAGATGCAC TCGCCGGGAC ACTTATAGGT
GCGGTACCGA CGTCTCCTTA CCTTGGGAAG TTAAAACAGG CCGTTCCGAA TACACAACTC
AAACTATATG ATTCTGTAGC GTCTATGATC CAAGCGGCGA GAGAGGGGCA TATCAGCAGC
TTCGTCGCAT CGTCTGCATG GACCCAACAT TATCTCGTTT TGAATCATGC CTGGTCTGAG
TTTCATCAGT TTGATGACCT TGAATTTGAA ACCGATATCT TTGTGTTAAC CCGACCCGAG
AATGTGGGGT TAGATAAACG TATCAAGGCG GGCTTCGAGT TAATTGGTCA AAATGAATTG
GCTGAAATTG AACAAAAATG GATGCTTAAC AGTAAAAATC GGGTATTCGA TGTTGAAAAT
TCGCGATTGG AATTCTCGCT ACCACAACGA GACTATCTGG CATCTGTAGG TGTATTAAAA
GTGGGTTATC TGAATAATTG GAAACCAATG GAATATGCCG ACTCAAACGG TGAGTTTTCC
GGAATTAACA GTGAAGTTGT AAAGCTTATC TCAGATAAGC TTAATTTGAA GTTAGAAGCT
GTCGTTTATG ATGAATGGCA GGATTTGATC ACAGCACTAC TCAATGGTGA TGTTGATATT
GCCGGCAGTG TGGCTGAGAC TGAGGAGCGA AAGAAGAAAC TACTCTTCAG TGATCCTTAC
TGGCCATCGC CATGGGCCTT GGCGACACCA ATAGATCGAG TATCTGTATT TCATATGCAA
CAGTTAGCGG GTCAAAGGCT GGCCATCGTC GAAGGTTACC AACTTGTATC CGATCTAATG
AGCGCCGATT ATGGCCTGGA TTTGTTGATT GTTGCCGATA CACGTGCTGG CCTGAAGGCC
GTATCAGAAG GGAAAGCCGA CGTTTTCGTC GAAAAAGTCA TCAATATGGC CGCTGAACTT
AAACAGGGTG ATTATGGACA ACTCAAGATG TCCGTATTGG CAGATTTTTC TGACCAGCAC
AGTCACTTTG GGATCCATCC TGATAAAGCA AAATTAGTTC CTATGATAAA TATGGCAATC
GGCACGGTAA ATCAGCAAAA ACAGCAAGAG ATCTATCAAA ATTGGGTTAA ACAACTACCT
CTTGCACCAA AAGCATCGCT AGCTGAGACT TGGTGGTTTT TTATCTGCTT CCTTACACTC
GCTTCGATAA TGTTCCTCGT TTTATTCAAG TATCGAATGG GACAAGAGAT CAGCAAAAGA
TTAGTGTTAG AAGATAAACT TAATCATCTT GCTAACCATG ATAGCCTTAC CCAGTTACCT
AACCGCTCAC TGTTAGATGA TAGATTAGAG CAGGCTGTGC TTCATCATAG CCGGGACTTA
AGTGCATTTG CTGTACTCTT TGTTAATATC GGTTGTCTCA AAGAGGTGAA TAAAAAGCAA
GGTCACAAGA TGGGTGATAA CTTGCTCATC AGTATCACAC AAGAGTTGCA ACAGTCGGTT
AGAAAATCTG ATACTGTGGC AAGGTTCGGC GCAGATGAAT TTGTTATTAT ATTGAACCGA
ACCAAAGATC TGGACATCGT CTGCCAGGTC GCCGAAACAA TCTTAACTAA TTTAGCAAAA
GATCTCGTTG GCGACATACC AGCCCAAGAT GTGAAGCCAA GTATTGGAAT TGCTATTTAC
CCCGCGGATG GTGATACGGC TGTCGAGTTA TTAAAAACAG CTGACAAGTT AATGTACCGC
GCGAAAAAAA GTGGTGGAAA TTGCTATAAA TCATCGTGA
|
|---|
| Protein sequence | MKSFIKLLSF LLVCFFASGL YADEGKPLVL VMGEDSYPYQ FVDEKGEPHG ILIDLWKAWS
QQTDTEVVFV SRHWHDSLKQ LSQGDADAHV GLAQTSVRSE IFDFAGQISQ VRTYLYLHKS
LSDRTSFSDL IPYQIGIVSG SSHEAELLAL EPRLSFKRYN SRHSLLKGVI EGEVHVFAGM
EGYLKDNNLN RQVVSLFPIK NRLLIKESPL HPAVIKSDLK TVDKINLGFA AISSKRFAAI
EERWLGINQQ KRGITVATTL NIEPFVSLGG DGLPHGLYVD IWHLWSEKTG IPVFFSTGDM
NSSLDDVRMG SADVHIGYPE SDALKSGLLR SQLLYKVKSR LFSFGHSIDN LDALAGTLIG
AVPTSPYLGK LKQAVPNTQL KLYDSVASMI QAAREGHISS FVASSAWTQH YLVLNHAWSE
FHQFDDLEFE TDIFVLTRPE NVGLDKRIKA GFELIGQNEL AEIEQKWMLN SKNRVFDVEN
SRLEFSLPQR DYLASVGVLK VGYLNNWKPM EYADSNGEFS GINSEVVKLI SDKLNLKLEA
VVYDEWQDLI TALLNGDVDI AGSVAETEER KKKLLFSDPY WPSPWALATP IDRVSVFHMQ
QLAGQRLAIV EGYQLVSDLM SADYGLDLLI VADTRAGLKA VSEGKADVFV EKVINMAAEL
KQGDYGQLKM SVLADFSDQH SHFGIHPDKA KLVPMINMAI GTVNQQKQQE IYQNWVKQLP
LAPKASLAET WWFFICFLTL ASIMFLVLFK YRMGQEISKR LVLEDKLNHL ANHDSLTQLP
NRSLLDDRLE QAVLHHSRDL SAFAVLFVNI GCLKEVNKKQ GHKMGDNLLI SITQELQQSV
RKSDTVARFG ADEFVIILNR TKDLDIVCQV AETILTNLAK DLVGDIPAQD VKPSIGIAIY
PADGDTAVEL LKTADKLMYR AKKSGGNCYK SS
|
|---|
| |