| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2013 |
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| Symbol | |
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| ID | 5614092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2436682 |
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| End bp | 2438640 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932899 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_001473750 |
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| Protein GI | 157375150 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.715705 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.547634 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAACAC GTCGTGAAAC CCGAGCTCAA GCTCAACAAT TTATTGATAA TCTAAAACCA
CTTCAACATC CAAATTCTGA GAAAGTTTAC TTAGTCGGTA GCCGTGATGA TATTCGGGTA
GGTATGCGTC AAATACACCA ATCAGAGACC ATGATTGGCG GCACCGAATC TCATCCCGTT
TTAGAATCAA ATCCGCCATT GAAAGTGTAC GATTGTGCCG GTCCATATTC CGATCCCAAC
GCCAAGATTA ACGTCCGTGA AGGTCTGGAT AAGTTCAGGG CAAATTGGAT CCTTGAGCGC
AATGATACCG AGCAATTGAT CGCTGCCAGT TCTGGTTTTA CACAGCAAAG GTTAGCCGAT
TACGGACTCG ACCATCTGCG TTTCGACTCG CTTCTTTCAC CCAGAAAGGC CAAACAAGGT
CAGTGTGTGA CTCAACTTCA TTATGCCAGA CAGGGGATAG TTACCCCGGA AATGGAGTAC
ATTGCCATCA GAGAGAATAT GGCTTTGAGT GAAGTGACCG ATGAAGCGTT AACTCAGAAA
GCAGAAGGTG AAAGTTTCGG CGCGGCGATA AGTCAGCCTA TTACCCCTGA GTTTGTCCGG
CAAGAGGTGG CACGGGGACG TGCCATTATT CCGCTGAATA TTAACCATCC CGAAGCCGAA
CCTATGATTA TCGGTCGTAA CTTTCTGGTT AAAGTGAACG CCAATATAGG TAACTCTGCG
GTGACCTCTT CAATCGAAGA GGAAGTTGAA AAACTGGTTT GGTCGACGCG TTGGGGAGCC
GATACGGTAA TGGATCTATC GACGGGTCGA TATATTCATG AAACAAGGGA ATGGATCATA
CGAAACTCGC CAGTGCCTAT TGGTACCGTG CCCATCTACC AAGCTCTGGA GAAGGTCAAT
GGCGTGGCGG AAGACCTCAC ATGGGAGATA TTCAGAGATA CTCTGCTTGA ACAGGCAGAG
CAAGGCGTCG ATTACTTTAC TATCCACGCA GGTGTGTTGC TTCGCTACGT CCCGATGACG
GCCAAGCGTT TGACCGGCAT CGTCTCACGG GGCGGATCAA TTATGGCAAA GTGGTGTCTC
TCTCACCATC TTGAAAACTT CTTGTATGAA CACTTCCGGG ATATCTGTGA GCTTTGCGCC
GCCTATGACG TTTCATTGTC ACTCGGTGAT GGAATGCGAC CGGGATCAAT TGCCGATGCT
AACGATGAAG CACAATTTTC TGAACTCGAA ACCTTAGGTG AGTTAGTTAA GATTGCCTGG
GAGTACGATG TGCAAACGAT CATCGAGGGG CCGGGTCATA TCCCCATGAA TCTGATTAAA
GAGAACATGG ATAAGCAGCT TGAGGTGTGT GATGAAGCGC CATTTTATAC CTTAGGCCCT
CAGACTACCG ATATCGCACC GGGTTATGAT CATTTCACTT CGGGGATCGG CGCGGCAATG
ATTGCCTGGT ATGGCTGTGC CATGCTCTGC TATGTGACGC CAAAAGAGCA CTTAGGTTTA
CCGAACAAGG AAGACGTCAA GCAAGGCTTG ATCACCTATA AGATTGCCGC TCATGCCGGT
GATGTGGCTA AGGGTCATCC GACAGCACAA ATTCGAGACA ATGCCCTGTC CAAGGCAAGG
TTTGAGTTTC GCTGGGAAGA TCAATATAAC TTAGGACTGG ATCCTGACAC CGCCAGAGCC
TATCACGATG AATCGCTTCC GCAGGAATCG GCGAAAGTTG CTCATTTCTG CTCCATGTGC
GGGCCCAAGT TCTGTTCGAT GAAGATAAGC CAAGAGGTCA GAGAATATGC GGCGGCGCAA
GAGGTTAAGC TGCATACAGA CACGGAGTTT AAGGCTAAGA GTGTCAAAGA GTCGGGTATG
GCTCAGATGT CTGCAGAATT TAAGGCTAAG GGGGCGGCGC TTTACCATGA AAGCGGCGCG
TTGGTGGAAG ATGTTGAACT TGTAGAAACC GAGGGCTAG
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| Protein sequence | MSTRRETRAQ AQQFIDNLKP LQHPNSEKVY LVGSRDDIRV GMRQIHQSET MIGGTESHPV
LESNPPLKVY DCAGPYSDPN AKINVREGLD KFRANWILER NDTEQLIAAS SGFTQQRLAD
YGLDHLRFDS LLSPRKAKQG QCVTQLHYAR QGIVTPEMEY IAIRENMALS EVTDEALTQK
AEGESFGAAI SQPITPEFVR QEVARGRAII PLNINHPEAE PMIIGRNFLV KVNANIGNSA
VTSSIEEEVE KLVWSTRWGA DTVMDLSTGR YIHETREWII RNSPVPIGTV PIYQALEKVN
GVAEDLTWEI FRDTLLEQAE QGVDYFTIHA GVLLRYVPMT AKRLTGIVSR GGSIMAKWCL
SHHLENFLYE HFRDICELCA AYDVSLSLGD GMRPGSIADA NDEAQFSELE TLGELVKIAW
EYDVQTIIEG PGHIPMNLIK ENMDKQLEVC DEAPFYTLGP QTTDIAPGYD HFTSGIGAAM
IAWYGCAMLC YVTPKEHLGL PNKEDVKQGL ITYKIAAHAG DVAKGHPTAQ IRDNALSKAR
FEFRWEDQYN LGLDPDTARA YHDESLPQES AKVAHFCSMC GPKFCSMKIS QEVREYAAAQ
EVKLHTDTEF KAKSVKESGM AQMSAEFKAK GAALYHESGA LVEDVELVET EG
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