Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1999 |
Symbol | fadE |
ID | 5613581 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2418841 |
End bp | 2421288 |
Gene Length | 2448 bp |
Protein Length | 815 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932885 |
Product | acyl-CoA dehydrogenase |
Protein accession | YP_001473736 |
Protein GI | 157375136 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0412808 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000639104 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGACTACCC TACTTTGGAT CCTTGCGATG CTTTTTACAT TAGGCGCCTT AGCCTATTTA AGAGTATCTC TGCTTACATC AAGCATCATC GCCGCAGTCG TCATGACTGT AGGTTCAGCA ACTGAAGTGA TTAGTCCCCT TATGTGGATT ATCTTTTTAG CTATCGCGCT CCCCCTAAAC ATTAGTGCAT TTCGAAAAAA CTATCTAACA AGACCTCTGT TAAAACTCTA CCGTGGCATC ATGCCTGAGA TGTCTTCTAC CGAAAAAGAA GCGATCGAAG CGGGCACAAC ATGGTGGGAT GCGGATCTTT TTGCAGGTAA GCCTGATTGG AAGAAACTTC ATAATTACCC TACGGCCAGA TTGAGTGCCG AAGAGCAAGC TTTCCTGGAT GGTCCGGTCG AAGAAGTCTG CAAAATGGTC AATCAACATC AGGTATCCCA TCAACTTGGT GATCTACCTG AAGAAGTTTG GCAATATCTG AAAGATCACG GCTTCTTCGC AATGATCATT AAGAAAAAGT ACGGCGGCCT TCAGTATTCT GCCTACGCTC AATCTCGCGT ACTTCAAAAG TTAGCAGGTG TCAGCAGTGA ATTGGCTTCA ACGGTTGGCG TACCGAACTC TTTAGGTCCG GGCGAGCTTC TACAGCACTA CGGTACTCCA GCCCAGCAAG ACCATTATCT GCCAAGACTG GCTAAAGGTC TGGAAGTTCC TTGTTTTGCC TTAACGAGCC CGGAAGCGGG TAGTGATGCC GGTGCCATTC CTGACTTAGG TATCGTCTGT AAAGGTGAGT GGGAAGGCGA AGACGTTCTA GGTATGAGAA TTACCTGGAA CAAGCGTTAC ATCACCCTTG CACCCTCTGC GACAGTACTT GGACTGGCAT TTAAACTGCA AGATCCTGAT CACCTGATGG GTGATAAAGA GGAACTTGGG ATCACCTGTG CTCTTATTCC AACAAATATT AAAGGGGTAG AAACGGGTCG TCGTCACTTG CCTCTTAACT GTATGTTCCA AAACGGTCCG ACCACAGGTA AAGACGTATT TGTCCCGTTG AGCTTTATCA TCGGCGGTCC GGAAATGGCC GGTCAAGGCT GGCGCATGCT GGTTGAATGC CTATCGGTTG GTCGTGGAAT CACTCTTCCT TCGAACTCTG CCGGTGGAGT TAAAACCGCC GCCGTAGCGA CCGGAGCTTA CGCCCGAATT CGTCGTCAAT TTAAACTACC TATCGGTAAA CTCGAAGGTA TCGAAGAGCC AATGGCTCGG ATCGGTGGTA ACGCATACCT GATGGATGCG GTAACAACCT TAACCACTAC GGGTATCGAT TTAGGCGAAA AGCCTTCGGT GATATCAGCC ATCGTTAAGT TCCACCTAAC TGATAGAATG CAGAAGTGTG TCATCGATGC GATGGATATC CATGGTGGTA AAGGCGTATG TTTAGGCCCG AATAACTATC TGGGCCGTGG CTACCAGGCT GCACCAATTG CAATCACAGT TGAGGGCGCG AACATCTTGA CCCGCTCACT GATCATCTAT GGCCAAGGGG CGATTCGTTG TCACCCTTAT GTATTGGCAG AGATGGAGTC GGCATTTGAT TCTGATAGCA ATAGAGGTCT GACCGACTTT GATTCGGCTC TGTTCGGGCA TATCGGATTC ACAATCAGTA ATCTGGTTCG CAGTTTCTGG CTGGGTCTGA CCTCCAGCCG TTTCTCAAAT TCACCGTATT CTGATAAGAC AAAACGTTAC TATCAACATA TGAATCGTTT CAGTGCAAAT CTGGCTCTGC TCTCTGACTT AGCCATGGCA ACACTGGGGG GTGGATTGAA GCGTAAGGAG CGGATCTCGG CACGACTCGG CGATCTATTG AGCCAGTTAT ATCTGGCATC GGCTACCCTT AAGCGTTATC AAGATGAAGG ACGTCAAACA GAAGACTTGG CGCTTGTACA ATGGGCCGTA GAGGATTGTC TGTATAAGCT TCAAGATTCT CTCGATGACC TTTTAGATAA CTTCCCTATG GGTCTGGGTC ATGTTTTACG CCTGATTATC TTCCCATTTG GTCGCCCGCT GAAACGCCCG AGTGACGTGT TAGATCATAA AGTCGCTAAG ATTATGCAAA CACCTTGTGC GAGTCGAGAC CGTCTGGGTA AAGGTCAATT CTGGACCGCA TGTGAAAATA ATGCCGTTGG TATTCAGGAG CAGACATTTA AAGACATTCT CGCTTGTGAG CCTCTGTATG ACAAAGTGTG TAAAGCAGCC GGTAAACGTC TTCCATTCAT GTGGCTGGAC AAGTTAGCAG CCGAAGGTAA AGCACTTGGT GTCTTGAGCG AAGATGATGT GGCCTTGCTT GAGCGTGCAG AGATTGGACG AATGAAATCG ATTAACGTCG ATGACTTCGA CCCCGACGAG TTACGAGCAT TCACTATCAC CAGCCCAAGC CATGAGCAAG CAGCTTAA
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Protein sequence | MTTLLWILAM LFTLGALAYL RVSLLTSSII AAVVMTVGSA TEVISPLMWI IFLAIALPLN ISAFRKNYLT RPLLKLYRGI MPEMSSTEKE AIEAGTTWWD ADLFAGKPDW KKLHNYPTAR LSAEEQAFLD GPVEEVCKMV NQHQVSHQLG DLPEEVWQYL KDHGFFAMII KKKYGGLQYS AYAQSRVLQK LAGVSSELAS TVGVPNSLGP GELLQHYGTP AQQDHYLPRL AKGLEVPCFA LTSPEAGSDA GAIPDLGIVC KGEWEGEDVL GMRITWNKRY ITLAPSATVL GLAFKLQDPD HLMGDKEELG ITCALIPTNI KGVETGRRHL PLNCMFQNGP TTGKDVFVPL SFIIGGPEMA GQGWRMLVEC LSVGRGITLP SNSAGGVKTA AVATGAYARI RRQFKLPIGK LEGIEEPMAR IGGNAYLMDA VTTLTTTGID LGEKPSVISA IVKFHLTDRM QKCVIDAMDI HGGKGVCLGP NNYLGRGYQA APIAITVEGA NILTRSLIIY GQGAIRCHPY VLAEMESAFD SDSNRGLTDF DSALFGHIGF TISNLVRSFW LGLTSSRFSN SPYSDKTKRY YQHMNRFSAN LALLSDLAMA TLGGGLKRKE RISARLGDLL SQLYLASATL KRYQDEGRQT EDLALVQWAV EDCLYKLQDS LDDLLDNFPM GLGHVLRLII FPFGRPLKRP SDVLDHKVAK IMQTPCASRD RLGKGQFWTA CENNAVGIQE QTFKDILACE PLYDKVCKAA GKRLPFMWLD KLAAEGKALG VLSEDDVALL ERAEIGRMKS INVDDFDPDE LRAFTITSPS HEQAA
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