Gene Ssed_1999 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1999 
SymbolfadE 
ID5613581 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2418841 
End bp2421288 
Gene Length2448 bp 
Protein Length815 aa 
Translation table11 
GC content48% 
IMG OID640932885 
Productacyl-CoA dehydrogenase 
Protein accessionYP_001473736 
Protein GI157375136 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0412808 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000639104 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGACTACCC TACTTTGGAT CCTTGCGATG CTTTTTACAT TAGGCGCCTT AGCCTATTTA 
AGAGTATCTC TGCTTACATC AAGCATCATC GCCGCAGTCG TCATGACTGT AGGTTCAGCA
ACTGAAGTGA TTAGTCCCCT TATGTGGATT ATCTTTTTAG CTATCGCGCT CCCCCTAAAC
ATTAGTGCAT TTCGAAAAAA CTATCTAACA AGACCTCTGT TAAAACTCTA CCGTGGCATC
ATGCCTGAGA TGTCTTCTAC CGAAAAAGAA GCGATCGAAG CGGGCACAAC ATGGTGGGAT
GCGGATCTTT TTGCAGGTAA GCCTGATTGG AAGAAACTTC ATAATTACCC TACGGCCAGA
TTGAGTGCCG AAGAGCAAGC TTTCCTGGAT GGTCCGGTCG AAGAAGTCTG CAAAATGGTC
AATCAACATC AGGTATCCCA TCAACTTGGT GATCTACCTG AAGAAGTTTG GCAATATCTG
AAAGATCACG GCTTCTTCGC AATGATCATT AAGAAAAAGT ACGGCGGCCT TCAGTATTCT
GCCTACGCTC AATCTCGCGT ACTTCAAAAG TTAGCAGGTG TCAGCAGTGA ATTGGCTTCA
ACGGTTGGCG TACCGAACTC TTTAGGTCCG GGCGAGCTTC TACAGCACTA CGGTACTCCA
GCCCAGCAAG ACCATTATCT GCCAAGACTG GCTAAAGGTC TGGAAGTTCC TTGTTTTGCC
TTAACGAGCC CGGAAGCGGG TAGTGATGCC GGTGCCATTC CTGACTTAGG TATCGTCTGT
AAAGGTGAGT GGGAAGGCGA AGACGTTCTA GGTATGAGAA TTACCTGGAA CAAGCGTTAC
ATCACCCTTG CACCCTCTGC GACAGTACTT GGACTGGCAT TTAAACTGCA AGATCCTGAT
CACCTGATGG GTGATAAAGA GGAACTTGGG ATCACCTGTG CTCTTATTCC AACAAATATT
AAAGGGGTAG AAACGGGTCG TCGTCACTTG CCTCTTAACT GTATGTTCCA AAACGGTCCG
ACCACAGGTA AAGACGTATT TGTCCCGTTG AGCTTTATCA TCGGCGGTCC GGAAATGGCC
GGTCAAGGCT GGCGCATGCT GGTTGAATGC CTATCGGTTG GTCGTGGAAT CACTCTTCCT
TCGAACTCTG CCGGTGGAGT TAAAACCGCC GCCGTAGCGA CCGGAGCTTA CGCCCGAATT
CGTCGTCAAT TTAAACTACC TATCGGTAAA CTCGAAGGTA TCGAAGAGCC AATGGCTCGG
ATCGGTGGTA ACGCATACCT GATGGATGCG GTAACAACCT TAACCACTAC GGGTATCGAT
TTAGGCGAAA AGCCTTCGGT GATATCAGCC ATCGTTAAGT TCCACCTAAC TGATAGAATG
CAGAAGTGTG TCATCGATGC GATGGATATC CATGGTGGTA AAGGCGTATG TTTAGGCCCG
AATAACTATC TGGGCCGTGG CTACCAGGCT GCACCAATTG CAATCACAGT TGAGGGCGCG
AACATCTTGA CCCGCTCACT GATCATCTAT GGCCAAGGGG CGATTCGTTG TCACCCTTAT
GTATTGGCAG AGATGGAGTC GGCATTTGAT TCTGATAGCA ATAGAGGTCT GACCGACTTT
GATTCGGCTC TGTTCGGGCA TATCGGATTC ACAATCAGTA ATCTGGTTCG CAGTTTCTGG
CTGGGTCTGA CCTCCAGCCG TTTCTCAAAT TCACCGTATT CTGATAAGAC AAAACGTTAC
TATCAACATA TGAATCGTTT CAGTGCAAAT CTGGCTCTGC TCTCTGACTT AGCCATGGCA
ACACTGGGGG GTGGATTGAA GCGTAAGGAG CGGATCTCGG CACGACTCGG CGATCTATTG
AGCCAGTTAT ATCTGGCATC GGCTACCCTT AAGCGTTATC AAGATGAAGG ACGTCAAACA
GAAGACTTGG CGCTTGTACA ATGGGCCGTA GAGGATTGTC TGTATAAGCT TCAAGATTCT
CTCGATGACC TTTTAGATAA CTTCCCTATG GGTCTGGGTC ATGTTTTACG CCTGATTATC
TTCCCATTTG GTCGCCCGCT GAAACGCCCG AGTGACGTGT TAGATCATAA AGTCGCTAAG
ATTATGCAAA CACCTTGTGC GAGTCGAGAC CGTCTGGGTA AAGGTCAATT CTGGACCGCA
TGTGAAAATA ATGCCGTTGG TATTCAGGAG CAGACATTTA AAGACATTCT CGCTTGTGAG
CCTCTGTATG ACAAAGTGTG TAAAGCAGCC GGTAAACGTC TTCCATTCAT GTGGCTGGAC
AAGTTAGCAG CCGAAGGTAA AGCACTTGGT GTCTTGAGCG AAGATGATGT GGCCTTGCTT
GAGCGTGCAG AGATTGGACG AATGAAATCG ATTAACGTCG ATGACTTCGA CCCCGACGAG
TTACGAGCAT TCACTATCAC CAGCCCAAGC CATGAGCAAG CAGCTTAA
 
Protein sequence
MTTLLWILAM LFTLGALAYL RVSLLTSSII AAVVMTVGSA TEVISPLMWI IFLAIALPLN 
ISAFRKNYLT RPLLKLYRGI MPEMSSTEKE AIEAGTTWWD ADLFAGKPDW KKLHNYPTAR
LSAEEQAFLD GPVEEVCKMV NQHQVSHQLG DLPEEVWQYL KDHGFFAMII KKKYGGLQYS
AYAQSRVLQK LAGVSSELAS TVGVPNSLGP GELLQHYGTP AQQDHYLPRL AKGLEVPCFA
LTSPEAGSDA GAIPDLGIVC KGEWEGEDVL GMRITWNKRY ITLAPSATVL GLAFKLQDPD
HLMGDKEELG ITCALIPTNI KGVETGRRHL PLNCMFQNGP TTGKDVFVPL SFIIGGPEMA
GQGWRMLVEC LSVGRGITLP SNSAGGVKTA AVATGAYARI RRQFKLPIGK LEGIEEPMAR
IGGNAYLMDA VTTLTTTGID LGEKPSVISA IVKFHLTDRM QKCVIDAMDI HGGKGVCLGP
NNYLGRGYQA APIAITVEGA NILTRSLIIY GQGAIRCHPY VLAEMESAFD SDSNRGLTDF
DSALFGHIGF TISNLVRSFW LGLTSSRFSN SPYSDKTKRY YQHMNRFSAN LALLSDLAMA
TLGGGLKRKE RISARLGDLL SQLYLASATL KRYQDEGRQT EDLALVQWAV EDCLYKLQDS
LDDLLDNFPM GLGHVLRLII FPFGRPLKRP SDVLDHKVAK IMQTPCASRD RLGKGQFWTA
CENNAVGIQE QTFKDILACE PLYDKVCKAA GKRLPFMWLD KLAAEGKALG VLSEDDVALL
ERAEIGRMKS INVDDFDPDE LRAFTITSPS HEQAA