| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1991 |
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| Symbol | |
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| ID | 5613369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2408187 |
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| End bp | 2409083 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932875 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001473728 |
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| Protein GI | 157375128 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000289116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000179151 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGAATAA CATTAAAACA GCTAACCATT TTTGAAGCGG TAGCACGAAG TGGACAAGTT
GCCCGTGCGG CTGAAATGGT TAACTTATCG GCTCCGGCAA CCTCGATGGC ATTATCGGAA
CTCGAGAGTC AATTGGATGC TAGGCTATTT GAGAGAGTGG GTAATCGGTT GAGACTTAAC
TCTCAGGGCA GTTTATTACT GCCTTTAGCG ACGGAAGCAC TTCAAAAATT CGATCAAATT
GAGCATCTTT TTTCTTCACC CGAAGCAGAA CTCAGTGGGA CATTAAACGT CAGTGCCAGT
TCTACCATTG GTAATTATTT GATGGCAAAA AGTTCGGTTG CATTTTGTCA GCAACATACC
AGCGCGCTTG TGGACCTCGA TATTACGAAT ACGCTTGCCG TGATTAAGTC AGTGCTCGAG
TTTCGCAGTG AAGTTGGATT TATTGAGGGC CAATGTCTGG ATAGTCGAAT AAGAGTCGAG
GCCTGGCACA AGGATAAACT ATTGGTATTT TGTCATCCGG CGCACCCTCT TGCGGGTCAA
CGGGTAGCCC CGCAAGCTTT GAAAGGGCAA CCTTGGGTGA TGAGAGAGGA GGGCTCCGGT
ACTCGAGATT ATTTTATCAG CTCCGCTCAA GCGCTGGATA TGCAGCCCAT CGAAAGATTT
AACTTCTCAA CGCCAGATGC CATCAAGCAA GCGGTAAAAC AGGGCGCGGG GTTAGCCGTA
CTGTCAGAGC TTACGCTCGA GAAAGAGGTA AGCCGAAAAG AGTTAGCGAT TATTGAAGTT
GAAGGGCTGG AGCTGGAGCG TCAGTTTTAT CGTATTCACC ATAAGAGTCG AAAGTCGACA
CCTTTGTGCG ATGCCTTTAT CGACTTCTGC AGGAGCTTTA TCAATGTGGC CACTTAG
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| Protein sequence | MRITLKQLTI FEAVARSGQV ARAAEMVNLS APATSMALSE LESQLDARLF ERVGNRLRLN
SQGSLLLPLA TEALQKFDQI EHLFSSPEAE LSGTLNVSAS STIGNYLMAK SSVAFCQQHT
SALVDLDITN TLAVIKSVLE FRSEVGFIEG QCLDSRIRVE AWHKDKLLVF CHPAHPLAGQ
RVAPQALKGQ PWVMREEGSG TRDYFISSAQ ALDMQPIERF NFSTPDAIKQ AVKQGAGLAV
LSELTLEKEV SRKELAIIEV EGLELERQFY RIHHKSRKST PLCDAFIDFC RSFINVAT
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