| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1990 |
|---|
| Symbol | |
|---|
| ID | 5612823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2407343 |
|---|
| End bp | 2408077 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640932874 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473727 |
|---|
| Protein GI | 157375127 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000251541 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000167474 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGTCAGTTA ATCCCAGGCC ACAGCTGCCC GAGCAATGGT CCCAATTGCC TAACGGCGAT
ACCATTAAGC GACATATTGA AAAAGAGCTG GCTCCCTGGT GGCCTAAGGT CTTCGGTTAC
CATATGTTGA GTCTGGGGGC CTTGAGTGCA GAGCTTGATA TGCCGGGGCT TCCCATTGGC
AGGCGCTTTT CTCTTTTTGA TGGTGAAGGT GCAGCGCTTA GAGCAGATTT TAGCGAATTG
CCGATTCAAA ACGGGGTGAT CGATGCGGTG GTTATGAATA TGCTGCTCGA GTTTGAGCCG
GATCCCTATA AATTACTGCG CGAAACGGAC CGGGTTTTGA TATCGGGGGG CTACCTCTTT
ATCATAGGTT TTAACCCGCT TAGTCCCGCT TTTATTGGTA AGATATTGCC GAAACAGCAA
GAGGCGTTGC CCTGGTGTGG CCGCTTTTTT ATGCCTTCGA GGGTAAAAGA CTGGCTTGGA
TTGTTAGGGT ACCGGGTCGT TGGTGATGAG CGTTTGTTAT ATCACCATAT GTTAAGTGAT
ATTAATCAGG ATAGTATATG GCAACATGCT TTAAAGGCAT GGTTGCCAGG GTCCGGCAGT
TTATATCTTA TCGTTGCCAG AAAACTTGAG TCTCCCTTGA CGCCGATCCA TGAGAAGCGA
AAAATCAGGC AGCCCAAGTG GAGTACGGCG CCAAGTGCCG GACGCGCGGG ACATCATTCG
AAGCAACAAA GTTAA
|
|---|
| Protein sequence | MSVNPRPQLP EQWSQLPNGD TIKRHIEKEL APWWPKVFGY HMLSLGALSA ELDMPGLPIG
RRFSLFDGEG AALRADFSEL PIQNGVIDAV VMNMLLEFEP DPYKLLRETD RVLISGGYLF
IIGFNPLSPA FIGKILPKQQ EALPWCGRFF MPSRVKDWLG LLGYRVVGDE RLLYHHMLSD
INQDSIWQHA LKAWLPGSGS LYLIVARKLE SPLTPIHEKR KIRQPKWSTA PSAGRAGHHS
KQQS
|
|---|
| |