| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1985 |
|---|
| Symbol | |
|---|
| ID | 5612799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2400317 |
|---|
| End bp | 2402152 |
|---|
| Gene Length | 1836 bp |
|---|
| Protein Length | 611 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640932869 |
|---|
| Product | AsmA family protein |
|---|
| Protein accession | YP_001473722 |
|---|
| Protein GI | 157375122 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0885974 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0733894 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCTG TTATGAAAAT ATTGAAATGG TTTTTTGTTG TATTTTTTAT TCTCATCATC
TCATTGGCGG CCTACTTGAC GCTGGTGTTT GATCCCAATG ATTTTAAACC TCAGCTTGTT
GACGCCGTAA AAGAGAATAC GGGGCGCGAC CTTGTGGTCG CAGATAAGTT GTCATGGACA
TTCTTTCCAT CGATTGGCAT AAAACTCTCC AAGGTTTCTC TGTCAAACCC ATCGGGCTTC
GATACCAGCT CCATGTTGGA AGTGAATGAA ATTGTGGCAG AGGTCGCTCT GATGCCTTTG
TTCAGCAAGC AAGTTGAAAT TGCTCAGCTG AATGTCGATG GACTGACGGT GAACCTGGAA
ACGCGTATCG ATGGTCAAAC CAGCTTCGAT GGTCTTGAGG GGAGCAAGAG TGCAGGCAAG
CCTGCTGCTG AACCGAGTTC TCAATCAGGT AAAGGTTTGG CTGGCTTGAA TATCGGTGGT
GTTGCCATCA CTAATACCCA AATCCGGATG CTGGATGAAA AGACCGGGAC AGAGCAGCTC
TTCAATCTGG AAAAGTTAAC CTTAGGTCAA TTTGCATTAG GGGAGTTCGC ACCACTGGAA
TATCAGTTTA ATGCAGAGCT TCCGGATATG ACCCTATCAA GCCATGGTGA AGGCCTGATT
AAGGTAGACG CTTCCATGCA GGCGATTGAG TTAAAAGATC TCAAGATCCT CAACTCTGTT
GCAGGAGAAG GCATACCGAA TAAAAAGCTA GATATCAGTC TACTTACTCA GGTATCGATA
GCATTAGATA AAAAACGATT AAAACTCTCT TTAGAGGAGT TCATTGCCGA TCAAATAGAG
GCGAAAGGAG AGGTTAGCGT TGCCTACGGT GGTAAGGTGC CCAATATTGA CGGCCAATTG
AGCTTCGGTG AGATTGATTT AGATAAATTT ATGCCTCCCA GCGATGCACC GAGTCAGTCA
GATGATAAAC AGACGCAAGC AACATCGGCT CAAGAACCGG ATCTGTCGGC AATGAAGTTA
GTTAACTTCA AACTGGGTGT GACCGCAGAG TCGATAAAGG TCGCCAATAT GCTCACCAGC
AAGTGGGTGA TGAACCTCGC ATTAAAAGAT GGCGTATTAA ACCTGAGTAA GCTTAGTGCT
AATCTTTACA AAGGTAAGCT GTCTGTCACG GCGCAAGTCG ACGCTCGAAA ATCTGTTCCG
AGTTACAGTT TTGAGAAATC GGTAGAAAAG GTTCAGATCC GTGAACTGTT GAAAGATGCT
GCAGAGATCG ATCTATTGGC CGGCACTGCA AACTTTACAG TGAAAGGAAA AGGGCGAAGC
TTAATAACGG CTAATATGAA AAAAAATCTT GCCGCAAAAG GTCAGTTTGA AGTTTCAGAT
GGCGCGTTAT ATGGAGTCAA TATCCCTCAG ATGCTCAGGG ATGCGCAAGC CAAGTTGAGT
GGTGATCTCT CTTCAACCGC TAGCGTCGAG AAAAAAACCG ATTTTACCAG TTTAACCGGA
TCATTTACGC TTGTTAATGG TGTTGCTTCT AACCCTGATC TACTCATGGC CTCCCCATTA
ATTCGACTCT CTGGTGCCGG AACCGCCAAT ATTGTCACAG AGGCATTAGA TTACTCTCTG
ATCACCTCGG TAGTCGGCTC CCTCGAGGGA CAAGGCGGAG GAGAACGGGA GGCGTTACAT
GGCGTCGAAA TTCCATTTGC TATCTCTGGC ACATTCTCTG AGCCAAAGTT CGCTCTGGAT
ACCGCAGCCC TGTTCGATGC TAAGTTGAAG CAGGAGACTG AAAAGGTAAA AGATAAATTA
AAAGATAGTC TCTTAAAGAA ACTGGGTGGA TTTTAA
|
|---|
| Protein sequence | MEPVMKILKW FFVVFFILII SLAAYLTLVF DPNDFKPQLV DAVKENTGRD LVVADKLSWT
FFPSIGIKLS KVSLSNPSGF DTSSMLEVNE IVAEVALMPL FSKQVEIAQL NVDGLTVNLE
TRIDGQTSFD GLEGSKSAGK PAAEPSSQSG KGLAGLNIGG VAITNTQIRM LDEKTGTEQL
FNLEKLTLGQ FALGEFAPLE YQFNAELPDM TLSSHGEGLI KVDASMQAIE LKDLKILNSV
AGEGIPNKKL DISLLTQVSI ALDKKRLKLS LEEFIADQIE AKGEVSVAYG GKVPNIDGQL
SFGEIDLDKF MPPSDAPSQS DDKQTQATSA QEPDLSAMKL VNFKLGVTAE SIKVANMLTS
KWVMNLALKD GVLNLSKLSA NLYKGKLSVT AQVDARKSVP SYSFEKSVEK VQIRELLKDA
AEIDLLAGTA NFTVKGKGRS LITANMKKNL AAKGQFEVSD GALYGVNIPQ MLRDAQAKLS
GDLSSTASVE KKTDFTSLTG SFTLVNGVAS NPDLLMASPL IRLSGAGTAN IVTEALDYSL
ITSVVGSLEG QGGGEREALH GVEIPFAISG TFSEPKFALD TAALFDAKLK QETEKVKDKL
KDSLLKKLGG F
|
|---|
| |