| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1983 |
|---|
| Symbol | |
|---|
| ID | 5612797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2397997 |
|---|
| End bp | 2399643 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640932867 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001473720 |
|---|
| Protein GI | 157375120 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000213036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.437149 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGTA TTAATCGTTT GTTTCGAAAG GTAAAAATTT CAACTCGCCT CTTTATTATG
TTGGGGTTAT CTATCGTTGC GACCATTTTT ATGTTTCTCT TTGCCCTTAT AAGTATTGAA
AACCTGTTAG TGGCTGAGAA AGAGGCTAAG TTGTCCTCAT TGGCCGATGT TGGTGAGAAA
GTGATATTTC GTTATTACCA AAGTGCTCAA GCTGGCGAAA TGACTGAAGA GGAGGCTAAG
CAAGGTGCCA TTTTAGCTCT GAATGAATTG AGATATGCGG GCAAGGAGTA TTATTGGACC
ATAGATACCA ATGGGGTGAT GATTCAGCAT GCTTTTGCTA AAAAGCTGAT TGGTACCAAT
GTATTGGGGA TAAAAGACCC TAACGGGGTC AAGTTATTTG AATTGATGGT GTCAGGTACA
GAGCGTAAGG AGTATGCGCT TATCGAATAT ATGTGGAATC GACCTAATGC CACAGACCCG
AGTCCTAAGA TGAGTGTGGT GAAGCGCTTT AAACCTTGGG GATGGATTGT CGGTACGGGG
ATGTACGTGG ATGATATTAA AACACAAGAA GCGGCTTTTG CCTGGCAGTA TCTATTTGTC
GGGGGGCTGG TTTGGTTACC CGTTATCTTT ATTCTGTTTA TCATAATTCA AAGCATATCG
AGGCCCATGC AGCAGACAAT TTCAGCATTT GAGAATATTG CTAAAGGTGA AGGCGATTTA
ACCCTGCGAT TGGAAGAGTC CGGCAGTGAT GAGCTCAAAG AGGTAGCCAG TAATTTCAAT
ATCTTTATCG TAAAAATTCA GGCCGTTGTG CAGTCGGTAT TGGCTTCAGT TTCCCATAGT
CAGGAGCTGG CCACTGGTCT GGCTGCCATC TCTTTGGAAG CAAATGAAGT CACCAATAAT
ATGCAGTCTG AGACGGAAAG TGTCGCAACC GCGATAAATG AGATGTCCAT GGCAGCATCA
GAAGTTGCTT CTAATGCACA GCTTGCCGCA GACAGTGCCG GAAGTGCGGA TTCAGAAGCG
GATAGGACGA CGAGTGTCGT TGGTAGTGCG ATGGTTAAGA TTAATGAGCT TTCGGTTGAG
CTGGAAACCA CATCGGAAGT TGCGCAAGGC TTGCAAGTGA GCTCAGGAAA AATAGGCCAA
ATTCTTGATG TTATCGTGGG TATAGCGGAG CAAACTAACC TGCTTGCACT GAATGCCGCC
ATTGAAGCGG CCCGCGCCGG TGAAGCGGGC CGTGGTTTTG CCGTGGTTGC CGATGAGGTG
AGGACGTTGG CAAGTCGTAC ACAGGAGTCT ACGCAGGAAA TTAATGGCAT CATCGATGCG
ATCAAACATT CGATCGTGAG TGTTAATCAG TCTGTTGAGA AGGCTAAGCT CCGTTCCAGT
GAGACGGTTC AGGAAACGGG TCAAGTGGTG GATGCACTGG AGACCATTAA GTCATCTATT
CGTCAGATTT CAGACATGAA TATTCAAATT GCAGCCGCGA CAGAGGAGCA GAGTGCCGTT
ATTGCAGAGT TAAATATGAA TGTGACTCGA ATTAATGATA TCTCGTTAGA GAATCAAGAG
AAGAGTGTCC AGATCGGCAA TTCGAGTCAA CAGATACAGG ACGGTTCAAC AGAGCTGAAC
AGCTTAGTAT CAAGTTTTAA GATTTAG
|
|---|
| Protein sequence | MDSINRLFRK VKISTRLFIM LGLSIVATIF MFLFALISIE NLLVAEKEAK LSSLADVGEK
VIFRYYQSAQ AGEMTEEEAK QGAILALNEL RYAGKEYYWT IDTNGVMIQH AFAKKLIGTN
VLGIKDPNGV KLFELMVSGT ERKEYALIEY MWNRPNATDP SPKMSVVKRF KPWGWIVGTG
MYVDDIKTQE AAFAWQYLFV GGLVWLPVIF ILFIIIQSIS RPMQQTISAF ENIAKGEGDL
TLRLEESGSD ELKEVASNFN IFIVKIQAVV QSVLASVSHS QELATGLAAI SLEANEVTNN
MQSETESVAT AINEMSMAAS EVASNAQLAA DSAGSADSEA DRTTSVVGSA MVKINELSVE
LETTSEVAQG LQVSSGKIGQ ILDVIVGIAE QTNLLALNAA IEAARAGEAG RGFAVVADEV
RTLASRTQES TQEINGIIDA IKHSIVSVNQ SVEKAKLRSS ETVQETGQVV DALETIKSSI
RQISDMNIQI AAATEEQSAV IAELNMNVTR INDISLENQE KSVQIGNSSQ QIQDGSTELN
SLVSSFKI
|
|---|
| |