| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1980 |
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| Symbol | |
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| ID | 5612689 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2394344 |
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| End bp | 2395891 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932864 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473717 |
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| Protein GI | 157375117 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1322] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.981976 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAATCT ATGACTTTCC TTTGACTCCT ATAACTATGG CCCTTCTCCT TATGCCTATC
GATATCGCAC TTTCTCTACC CGAAATATTA GTCTTGGCAG CCGTCTCTTT TCTGGCAATT
TTAATCGGGG CGCTTCTGAA TCAGAAACTC ACTCGCCATA GATGGCAGAG TGTAAGAGAA
GAATTGGTCG TTCAACATCA GCAAGCGATG GAGAAGATAC AGGAGTCGCT AAAAAGCAGT
GACACTTTGC TGGCCGACAA AGATCAGCAA CTCGATCAAT TTCAATTCAA ATTAGAACAA
AACCTGGCCG CATTTGGAAA GGCACAGGCC GAGGCGGGTC GTCTCCCCAA ATTAGAGACT
CAATTTAGCG AGTGCCAGCG AAAGCTGATG GAAACTCAGT TAGCACTATC AAAATCCAAT
GCGATGCAAC AGACACTGAC CGTTAAATTT ACGGCAGAAC AGGAAGCGAT GCAGGATAGA
GTTACCGTCT TACAAGATGC CGAACTCCGA CTTAAAACCC AATTTGAAAA CTTAGCCAAC
AAAATATTCG AAGAACGAAG CGAAAAACTT CAGCATCAAA ATACTCATCA ACTCGACAGT
ATTCTCGCGC CTTTTAAGCA GCAGCTGGAA GGGTTCAGAA AACAAGTTCA TGAGTCCTAC
ACTAACGAGC AATCTCAACG CAGTGCATTC AACCATCAAC TGGAATCGCT TAAAACACTC
AATCTGCAGA TGAGCCAGGA CGCTGTAAAT CTGACCAATG CACTTAAAGG TGATAATAAA
CAACAGGGTA ATTGGGGAGA GGTGATTCTA GACCGAGTCT TACAGGAGAG TGGATTGCGA
GAGGGACATG AATATGACAC TCAAAGCGAT CTTAAAAATG ATGATGGCAA ACGCTTTAAG
CCAGATGTTA TCGTGCATCT GCCCGAAAAC AAAGATGTGG TCATAGATGC GAAAATGTCA
CTGGTGGCTT ATGAACGTTA CTTCAATAGT GATGATGACA ATGTTCGGGC TCAAGCCCTG
AAAGATCATG TCCTTTCGTT GAGAGGACAT ATTAAAGGTC TGAGTCAGAA GGATTACCAA
AAACTCCATG GATTAACCAG TCTGGATTAC GTGTTAATGT TCATTCCGCT CGAGCCTGCG
TTCCTGCTGG CTCTCGAGCA TGACCCAAGT CTGGTCAACT ATGCCTTGGA ACAAAATATT
ATGTTAGTGA GCCCGACAAA CCTGCTCGTG GCATTAAGGA CAATTAATAA TATCTGGCGT
TATGAATATC AAAATCAAAA TGCGCAACAG ATCGCCAAAC AGGCCGGGAA AATTTACGAT
AAACTGTGTG GATATATCGA CGATATGGAC AAGTTAGGCC GGGCACTGGA GGGAGCGGAG
AAAACCTATG CCAGCGCCAT GAGTAAACTC TCCAGCGGAA AAGGAAACTT GATCAAACAG
GCGCACCAGA TGCAGCAGTT AGGGGTAGAT ACGAGTAAGA AACTCGATCC CCGCCTGCTC
GATAGGGCTC TCGCCGACTA CCACATAGAT GAAAAAAAGT TAAATTGA
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| Protein sequence | MRIYDFPLTP ITMALLLMPI DIALSLPEIL VLAAVSFLAI LIGALLNQKL TRHRWQSVRE
ELVVQHQQAM EKIQESLKSS DTLLADKDQQ LDQFQFKLEQ NLAAFGKAQA EAGRLPKLET
QFSECQRKLM ETQLALSKSN AMQQTLTVKF TAEQEAMQDR VTVLQDAELR LKTQFENLAN
KIFEERSEKL QHQNTHQLDS ILAPFKQQLE GFRKQVHESY TNEQSQRSAF NHQLESLKTL
NLQMSQDAVN LTNALKGDNK QQGNWGEVIL DRVLQESGLR EGHEYDTQSD LKNDDGKRFK
PDVIVHLPEN KDVVIDAKMS LVAYERYFNS DDDNVRAQAL KDHVLSLRGH IKGLSQKDYQ
KLHGLTSLDY VLMFIPLEPA FLLALEHDPS LVNYALEQNI MLVSPTNLLV ALRTINNIWR
YEYQNQNAQQ IAKQAGKIYD KLCGYIDDMD KLGRALEGAE KTYASAMSKL SSGKGNLIKQ
AHQMQQLGVD TSKKLDPRLL DRALADYHID EKKLN
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