| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1974 |
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| Symbol | |
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| ID | 5612487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2384888 |
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| End bp | 2385559 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640932858 |
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| Product | two component transcriptional regulator, winged helix family protein |
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| Protein accession | YP_001473711 |
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| Protein GI | 157375111 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.667108 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTAAATT TATTACTTGT TGAAGACGAC ATAGATCTAG CGACTGCTGT AATCGAATAC
CTTGAGATGG AATCAATACA ATGTGATAGT GCCTACAATG GTTTAACAGG CATGAATCTT
ATCGAGAATA ATGACTATCA AGTCATTATT CTCGACCTCA ACCTTCCTAA AATGGATGGG
CTTGAAGTTT GTAAGAAGAT GCGAGAGCTG GGAGATGACA CACCAGTACT CATGCTAACA
GCAAGAGATA GCCTTAATGA TAAAGTCGCA GGTTTTAATG CTGGTACCGA TGACTATTTG
GTTAAACCTT TTGCAATGGA AGAGTTAATT GTAAGAATCA AAGCGCTGTC TTTACGCAGA
AGCGGTCAAA TAAATAACCT TAGCGTTGGT GATCTTACCG TCGATTTAGT GAGAAAAATT
GCAGTTCGAG GAGGACGAGA GCTTAAACTT TCTCCCTCAA GTTTTAAATT ATTAGAGATA
CTTATGAGGC AAAGTCCAAT GCCCGTCTCA AGAGAACATT TGATGCAAGG TCTTTGGGGT
GACGATCAGC CAGACTCTAA TAGTTTAAAG GTGCATATCT ACAAATTAAG GAAAGAATTA
GAGACAAATG CTGACACGCC ACTTTTACAT ACAGTTACAG GACATGGTTT TTCAATTAGA
GAATCGTTAT GA
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| Protein sequence | MLNLLLVEDD IDLATAVIEY LEMESIQCDS AYNGLTGMNL IENNDYQVII LDLNLPKMDG
LEVCKKMREL GDDTPVLMLT ARDSLNDKVA GFNAGTDDYL VKPFAMEELI VRIKALSLRR
SGQINNLSVG DLTVDLVRKI AVRGGRELKL SPSSFKLLEI LMRQSPMPVS REHLMQGLWG
DDQPDSNSLK VHIYKLRKEL ETNADTPLLH TVTGHGFSIR ESL
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