| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1918 |
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| Symbol | |
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| ID | 5610680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2306880 |
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| End bp | 2308601 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932804 |
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| Product | ABC-type sugar transport system, periplasmic component |
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| Protein accession | YP_001473657 |
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| Protein GI | 157375057 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000332483 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCGATA TCCGACAGAA TAAACTTTTC ACTCTCCTGT TGCTGTCCAT TGCATGGTTA
AGCTTGGATG TGCACGCGCT GTTCGAGCCT CAGTTAAAGT CCGCAGAGTA TTGGGTCACC
AATGAGTTTC AACCATCAAC CCTGACTCAA GCCGAGCAGA TGCAGGAGAT GAACTGGTTT
GTCGAGGCCA GTAAGCCCTA TTTCGGCTTA CAGATCCGGG TGGTGTCGGA GCGAATAGCC
ACCCACGGGT ATGAAGCCAG CGTACTTGCC AAAGCATTTT TTGAAATAAC GGGTATTCAT
GTCGTCCATG AATTAACCGG TGAAGATGAT GTCATCAATA AACTCTCGGC GCAGATCTTT
ACCCATCAAA ATCTCTACGA TGCCTACATC AACGACAGCG ATCTGATTGG CACCCACTTT
AGGTCCAACG CCGTCCTTCC CTTATCTGAC TTTATGAAGA ACGAGGGTGC GGCAGTCACT
CTACCCACAT TGGACCTGCA AGATTTTATC GGACTAAAAT TCACCACAGG GCCCGATGGC
AAGTTATATC AACTGCCGGA TCAGCAGTTT GCTAACCTCT ATTGGTATAG ACACGATTGG
TTTAACCGGG AAGATTTTAA GCAACGTTTT AGATTGCGAT ACGGTTATGA GCTTGGGGTT
CCGCAGAACT GGCAAGCCTA TGAAGATATC GCCGAGTTTT TCAGTGACGA TGTTAAAGAG
ATAGAAGGGA AACGGATCTA TGGGCATATG GATTACGCAA AAACAGATCC ATCACTTGGC
TGGAGAATGT CGGATGCCTG GCTCTCTATG GCGGGGGTGG GAGATAAGGG GTTACCTAAT
GGACTGCCGG TGGATGAGTG GGGGATCAGA GTCGAGCAGT GCCGTCCGGT AGGGGCGAGT
GTCGAGCGAG GTGGCGCCTT AAATGGCCCA GCTTCCGTGT ATGCGGTCGA CAAATTTATC
TATTGGCTAC ATCGTTTTGC GCCTGAGGAG TCTATCGAGC TTAACTTCAC TCAGGCCGGA
GAGTGGCCGG GTAAAGGGCT CATCGCCCAG CAGATATTTT GGTATACGGC ATTTGTCGCC
GATCTCACTA AGCCTGGCTT GCCGGTGATG AATCCCGATG GCACGCCGAA GTGGCGCGTC
GCTCCTTCTC CGGTGGGGAA ATATTGGCAA GATGGGATGA AGTCGGGTTA TCAGGATACC
GGTGCATGGA CCTTGTTAAA AAATACCCCG TTAGAAAGAC AGCAGGCTGC ATGGCTCTAT
GCCCAATTTG TCGTATCTAA AACCGTATCA CTTAAAAAAA CCTTAGTGGG ATTAACACCT
ATTCGCCTGT CAGATATTGA ATCGGATGTG ATGACGCAAA GAGCGCCTTA TCTGGGGGGC
TTGGTCGAAT TCTATCGTAG TAGAGGCCGA GATGTATGGA CGCCTACGGG AACCAATGTG
CCCGACTATC CGGGTCTGGC AAATTACTGG TGGCACTATA TTTCACAGAT AATCGAGGGC
AAGGTGACGG TACAAAAAGG GATGGATAAC TTTGCTGCCG CCGTGGATAA ACGACTGAAG
CGTATTGGAA AAAGGGCTGA TATGAAGTGC GCCCCCAAAT TAAATCCAAT CTCGAAGAGG
GAGTTCTGGC TGAATGCTCC CGGGGCGCCT AAGCGCGAAA TATCCGCGAC TCAAGTGGGA
AAGACACTTT CTTATGAGGA GGCGATCAAT GTTTGGAAGT AG
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| Protein sequence | MSDIRQNKLF TLLLLSIAWL SLDVHALFEP QLKSAEYWVT NEFQPSTLTQ AEQMQEMNWF
VEASKPYFGL QIRVVSERIA THGYEASVLA KAFFEITGIH VVHELTGEDD VINKLSAQIF
THQNLYDAYI NDSDLIGTHF RSNAVLPLSD FMKNEGAAVT LPTLDLQDFI GLKFTTGPDG
KLYQLPDQQF ANLYWYRHDW FNREDFKQRF RLRYGYELGV PQNWQAYEDI AEFFSDDVKE
IEGKRIYGHM DYAKTDPSLG WRMSDAWLSM AGVGDKGLPN GLPVDEWGIR VEQCRPVGAS
VERGGALNGP ASVYAVDKFI YWLHRFAPEE SIELNFTQAG EWPGKGLIAQ QIFWYTAFVA
DLTKPGLPVM NPDGTPKWRV APSPVGKYWQ DGMKSGYQDT GAWTLLKNTP LERQQAAWLY
AQFVVSKTVS LKKTLVGLTP IRLSDIESDV MTQRAPYLGG LVEFYRSRGR DVWTPTGTNV
PDYPGLANYW WHYISQIIEG KVTVQKGMDN FAAAVDKRLK RIGKRADMKC APKLNPISKR
EFWLNAPGAP KREISATQVG KTLSYEEAIN VWK
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