| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1906 |
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| Symbol | |
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| ID | 5610802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2291055 |
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| End bp | 2291720 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932792 |
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| Product | Ni/Fe-hydrogenase, b-type cytochrome subunit |
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| Protein accession | YP_001473645 |
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| Protein GI | 157375045 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1969] Ni,Fe-hydrogenase I cytochrome b subunit |
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| TIGRFAM ID | [TIGR02125] Ni/Fe-hydrogenase, b-type cytochrome subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0142953 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATCATT CTGCGACCCA TACTAGAGAC TTGATCTTCA GCCCTGCGAT CCGGATTTTT
CACTGGCTCC GGGCACTGTC GATACTCGTT CTGGTTATCA CAGGATTTTA TATATCTTGG
CCATTTTTAG TGGCACCTGA AACTAATGAT ATTCAGGTTC AGAGCTATAT CCGCTTTGCT
CACTTAGTGT TTGGCTTTGC GTTAACGGCC ATCACCCTGG TGCGCTTTTA CCTCTTCTTC
TTCGGCAAGA GCGACATTGA ACGTCGATCT TTCCGAGATG TGTCGAGTGT AAGTAGCTGG
GTAAAAAACT TGAAATCATA CTTATGGATG GGACACCTGA ATAAAGCGGG TGTCTATGGA
CCATTACAGT TCACAACCTA TGTATTGATC TCGTTGATGG CTCTGATTAT CTGTATCACT
GGCCTGGTAC TGTACGCCAA CGTCTACCAC CTTGGAATGG GTGGCATGAT GTGGGATGCA
GCAGCTTGGA TCACCGCACA GATGGGTGGA CTGGCACAAG TAAGAATTTG GCATCACTAC
CTTACTTGGG TATTTATCAT CTTCGTTCTT GTGCACGTAT ACATGGCCGT ATGGTCAGGT
ATCAGGTTCA AGCATAACTC TGTAGATTCA ATTGTCTCTG GTTATGATTA CCACAAGAAG
CACTAG
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| Protein sequence | MNHSATHTRD LIFSPAIRIF HWLRALSILV LVITGFYISW PFLVAPETND IQVQSYIRFA
HLVFGFALTA ITLVRFYLFF FGKSDIERRS FRDVSSVSSW VKNLKSYLWM GHLNKAGVYG
PLQFTTYVLI SLMALIICIT GLVLYANVYH LGMGGMMWDA AAWITAQMGG LAQVRIWHHY
LTWVFIIFVL VHVYMAVWSG IRFKHNSVDS IVSGYDYHKK H
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