Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1887 |
Symbol | infA |
ID | 5610987 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2274522 |
End bp | 2274740 |
Gene Length | 219 bp |
Protein Length | 72 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932773 |
Product | translation initiation factor IF-1 |
Protein accession | YP_001473626 |
Protein GI | 157375026 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0361] Translation initiation factor 1 (IF-1) |
TIGRFAM ID | [TIGR00008] translation initiation factor IF-1 |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000185401 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000121311 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCGAAAG AAGACAACAT TGAGATGCAA GGCACGATCC TTGAAACCTT GCCGAACACA ATGTTTCGTG TAGAGCTAGA GAACGGTCAC GTTGTGATTG CACACATCTC AGGCAAAATG CGCAAAAACT ACATTAGAAT TTTGACCGGT GATAAGGTCA CAGTTCAGCT GACCCCTTAC GATTTGAGCA AAGGTCGCAT CGTCTTCCGT TCACGCTAA
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Protein sequence | MAKEDNIEMQ GTILETLPNT MFRVELENGH VVIAHISGKM RKNYIRILTG DKVTVQLTPY DLSKGRIVFR SR
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