| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1882 |
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| Symbol | |
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| ID | 5613400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2267919 |
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| End bp | 2268629 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932768 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_001473621 |
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| Protein GI | 157375021 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.733285 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000160719 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | GTGAGTCACA CAAATTCTCG TCAAACAAGA TCTAAAAGCG CCACTTCTCC TTCCTCGACA
GATCGCAGAG GCAAAGTTAC CAACAGATTT AATAAGGCAA AAAGCCCACA CCTGGGGGCT
GAAAAACACA AAACCCGTAA AACGGTTAAG CCCAGAGCAA AAGATCCCAT CATCGTCTTG
TTTAACAAGC CATTCGATGT ACTTTGCCAG TTCACCGATG AGCAGGGACG ACAAACCTTA
AAAGACTACA TTCCCATTCC GGATGTCTAT GCTGCCGGGC GGTTGGACCG AGATAGTGAA
GGCCTGCTTT TACTCACCAA CGACGGGAAA TTACAATCAA AAATTACCGA GCCTAAGAAA
AAAACTTTCA AGACCTATTG GGCTCAGGTT GAAGGTGAAC CCAATGAAGC AGATGTAGAT
AAGTTACGCC ATGGTGTCGA GCTAAAGGAT GGGATGACCT TGCCGGCAAA AGTCATGATA
ATGACTCAAC CCGATGTATG GCCACGTACT CCACCTATCA GAGAGCGTAA AGGTATCCCG
ACGACTTGGC TCGAGATTCA AATCTGTGAA GGCCGAAACC GTCAGGTAAG AAGAATGACG
GCAAACATAG GGTTTCCCAC TCTCAGATTA ATTCGCTATA AAATAGGACA ATGGAGTCTT
AACGATCTCC AATCCGGAGA ATACCAGCGT ATAGATATGG TTAACTTATG A
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| Protein sequence | MSHTNSRQTR SKSATSPSST DRRGKVTNRF NKAKSPHLGA EKHKTRKTVK PRAKDPIIVL
FNKPFDVLCQ FTDEQGRQTL KDYIPIPDVY AAGRLDRDSE GLLLLTNDGK LQSKITEPKK
KTFKTYWAQV EGEPNEADVD KLRHGVELKD GMTLPAKVMI MTQPDVWPRT PPIRERKGIP
TTWLEIQICE GRNRQVRRMT ANIGFPTLRL IRYKIGQWSL NDLQSGEYQR IDMVNL
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