| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1881 |
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| Symbol | mnmA |
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| ID | 5610779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2266554 |
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| End bp | 2267672 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932767 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_001473620 |
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| Protein GI | 157375020 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000181944 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCATTAA TCGAACCCAC TGCTATTAAC AATAAAAAAG TCATCGTCGG CATGTCTGGC
GGTGTTGATT CATCAGTTTC GGCTTACCTG TTACTTAAAC AGGGATATCA GGTCGAAGGT
CTTTTCATGA AAAATTGGGA AGAAGATGAC ACCGATGAAT ATTGTGCTGC GGCAGACGAT
CTAAAAGATG CACAAGCAGT ATGTGACAAG CTGGGTATCA AACTACACAC AGTCAACTTC
GCCTCTGAAT ATTGGGACAA TGTGTTCGAG TATTTTTTAG CCGAATATAA AGCGGGCAGA
ACGCCAAATC CTGATATCAT CTGTAATAAG GAGATTAAGT TTAAAGCTTT TCTCGAGTTT
GCTGATGACA TCTTAGATGC TGACTATATC GCTATGGGTC ATTATGTTCG CAGAAGCGAT
GAAAGCGGTC AAAGCCAGAT GTTACGAGGC AGAGATGGCA ATAAAGATCA AAGCTACTTC
CTCTATACCT TAAGCCATGA GCAAATTTCC CGCTCACTTT TCCCTGTAGG CGAACTCGAA
AAGAGCGAAG TCAGAGAGAT AGCGAAAGAG ATGGGTCTTG TCACCCACGA TAAGAAAGAC
AGTACCGGGA TCTGTTTTAT CGGCGAACGA AAGTTTACTG ATTTCCTGAG CACCTTCTTG
CCTGCACAGC CAGGAAACAT CGAAACCGCC GAAGGTGAAA TCATCGGCAA ACACCAGGGT
CTCATGTACC ACACCTTAGG TCAGCGAAAA GGGCTCGGGA TCGGTGGCAT GAAGAACAGT
AATGATGACC CTTGGTATGT GGTCGACAAA GAGATGGACA GAAACGTACT CGTTGTCGGT
CAAGGCGGTC ATCACCCAAG ATTAATGTCG GTGGGCTTCT ATGCCGATCA ACTCCACTGG
GTCGACCGAA AAGGACCTAT CGATGGTGCT CAGATCACGG TCAAGACTCG CTACCGCCAA
AGAGATGTTG CCTGCACATT AACTTATGAA GGCGATGATA GAATAAAAGT CATATTCGAT
GAGCCCGTAG CCGCTGTGAC CCCTGGTCAA TCGGCGGTGT TTTATGATGC CGAGCTTTGC
TTAGGTGGCG GTATCATCGA TTCATTAATT AGAGAATAA
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| Protein sequence | MALIEPTAIN NKKVIVGMSG GVDSSVSAYL LLKQGYQVEG LFMKNWEEDD TDEYCAAADD
LKDAQAVCDK LGIKLHTVNF ASEYWDNVFE YFLAEYKAGR TPNPDIICNK EIKFKAFLEF
ADDILDADYI AMGHYVRRSD ESGQSQMLRG RDGNKDQSYF LYTLSHEQIS RSLFPVGELE
KSEVREIAKE MGLVTHDKKD STGICFIGER KFTDFLSTFL PAQPGNIETA EGEIIGKHQG
LMYHTLGQRK GLGIGGMKNS NDDPWYVVDK EMDRNVLVVG QGGHHPRLMS VGFYADQLHW
VDRKGPIDGA QITVKTRYRQ RDVACTLTYE GDDRIKVIFD EPVAAVTPGQ SAVFYDAELC
LGGGIIDSLI RE
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