| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1880 |
|---|
| Symbol | |
|---|
| ID | 5610778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2265936 |
|---|
| End bp | 2266550 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640932766 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473619 |
|---|
| Protein GI | 157375019 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2915] Uncharacterized protein involved in purine metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000129712 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGATC AGCTAATTGA CCGTACTATG GCTTTTGCAG GAATTTTGCA GGCCGTGGCA
CAAGTGCAAC ACATAGCCAG ACATGGAAAC TCAGACCGAG ATAGTCTCGC TGCCTGTTTA
AACACTGTCT TAGTCACGAA TCCAGACACG ACCTCAGATG TTTATGCTGA CAAGGTAGCC
TTAAATAAAG GCTACCAACT CATCATCAAT CAACTCGGTG ATGCTAAAGA TAAAGATGTC
GAAGTGACTC GATACCTTGT CGGTATATTA GCCTTAGAGA GAAAGTTGGC TCGTGGCAAT
GCCATGAGCA TTTTATCGGA AAGAATCAAT CAGATTCACC GTCAGCTCCA CCACTTTGAG
ATCACCGACG AGCAGGTCAT CGCCAATTTC GCTGGTATCT ATAGCGATAT TATCAGCACC
TTAGGTCCAA AAATTCAAAT CTCGGGTAAT CCGGAGTATC TGAAACAATC TCAAGTACAG
GAAAAAATCC GTGCACTTTT ACTGTCTGCC ATGCGCAGCG CAGTATTGTG GCGCCAATTA
GGAGGCAAGC GCAGACACCT TGTCTTCGCC AGAAAAACAA TAGTCGATAC GGCAAAAAAA
AGCCTCACCC TATAA
|
|---|
| Protein sequence | MSDQLIDRTM AFAGILQAVA QVQHIARHGN SDRDSLAACL NTVLVTNPDT TSDVYADKVA
LNKGYQLIIN QLGDAKDKDV EVTRYLVGIL ALERKLARGN AMSILSERIN QIHRQLHHFE
ITDEQVIANF AGIYSDIIST LGPKIQISGN PEYLKQSQVQ EKIRALLLSA MRSAVLWRQL
GGKRRHLVFA RKTIVDTAKK SLTL
|
|---|
| |