| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1872 |
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| Symbol | |
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| ID | 5609726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2257426 |
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| End bp | 2260485 |
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| Gene Length | 3060 bp |
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| Protein Length | 1019 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932758 |
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| Product | D-lactate dehydrogenase (cytochrome) |
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| Protein accession | YP_001473611 |
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| Protein GI | 157375011 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0247] Fe-S oxidoreductase
[COG0277] FAD/FMN-containing dehydrogenases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000561674 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTTACCTA TCGATAAGTT ACCAAAGTTA TCTCATGAAC AAACGCTAGA GCCCGTATAT
CTTGCCTTCC TGGCAGCGCT TGAGCAAAGT GATTTCACTG GTGATATCGA TAAACGCTAC
AGTGCGCGTT TAGCGCAGGC GACAGATAAC TCAGTGTATC AATTCCTTCC TCAAGCCGTT
ATCTACCCCA GAAGTCAGAA AGATGTGCGT TTAGTACTTA TGCTGGCGAC CAGTGCTGAA
TTTTCGCAAG TGGTATTCAG TGCCCGTGGT GGCGGTACAG GAACCAATGG CCAGGCGTTG
ACTCATGGAT TAGTCCTGGA CCTGTCTCGA TATTTGAATA AGGTCATAGA AATTAACCCT
GAGGAAGCGT GGGTTAGGGT CGAAGCCGGT GTGGTCAAAG ATGCGCTTAA TGACGCTTTG
AGACCCCATG GATATTTCTT CAGTCCCGAT CTCTCCACAT CAAATAGGGC GACGATGGGG
GGGATGGTTA ATACCGATGC CTCGGGAGCC GGTTCACTGG TTTATGGCAA AACCTCAGAT
CATGTTATCG GCCTCTCCAG TGTGCTATAT GATGGTAGTG TGCTCGATAC TTATTCAATC
ACGCCCAAGG AACTCGAGAA TATTGATGCC GTGACATCTA ACCCTCTCGG TCAAACCTTG
CTGACGTCGA TAGCTAATAT TTGCAGTGAC AAACGTCCAC TCATTGAATC CAGATTTCCA
AAACTTAATC GATTTTTAAC GGGTTACGAC CTTAAGAATG TCTGGAATGA TGAGTTAACT
GAATTTAACC TGTCGAGAAT ATTGACTGGC TCTGAAGGTA CGCTTGCCGT TATTACCGAA
GCTAAATTGA ATATTACACC GCTTCCTTCG GTGCGAATGA TGGTTAACAT CAAGTACAAC
TCTTTCGAAT CGGCGCTGCG TCATGCCCCA GAGCTCGTGA AAGCCAAAGC GACCGTTGTC
GAAACGATAG ACTCGAAAGT CCTTAATCTG GCGCAACAGG ACATCATCTG GCACTCCGTT
TCTGAGCTGA TAAAAGATGT TCCCGGCAGT GTTATCGATG GACTCAATAT GGTGGAGTTT
GCCGGCGAGC AGGAGGAGGT CGAGGCTAAA GTCGCTGCAT TAACCTCAGC ATTAGAGACA
CAAATTGATG AAAGCGCCGG TGGGCTGCTC GGCTATCAGG TCACCAATGA TAAAAAGAGC
ATCAATACGA TCTACGCCAT GCGTAAGAAA GCCGTTGGCT TACTTGGCGC GGCTAAAGGA
CGTAGAAAAC CGCTGGCCTT TGCAGAAGAT ACGGCCGTAC CCCCTGAAAA ACTCGCCGAC
TTCATCATGG AGTTCAGAGC CTTACTCGAC AGTCATCAGC TTCAATATGG TATGTTTGGT
CATGTTGACG CCGGCGTACT TCATGTCAGA CCTGCACTGG ATATGTGTGA TATTGATGAT
GAAAGGTTGC TTAAAACCGT TTCGGACCAA GTGGCTGAGC TTACATTAAA ATATGGCGGT
TTGATGTGGG GAGAGCACGG TAAAGGCGTG CGTGGTGAAT ATGGTCCCTC GGTCTTTGGT
GAAGAGCTGT ACGGTGTTCT GGAAGAGGTT AAAGGGTTGT TTGACCCTAA GAATAAATTA
AATCCCGGTA AGCTGGTGGC TCCTAAGGGG ACAGGTGCAC TGATTTATAA TGTCGATAGT
GTTAAACGCG GCAGTTTCGA TCGCCAAATT CCCATGGAAA CCAGAGAGGC TTTCCCTGAT
GTGATGAACT GCAACGGCAA TGGGCTTTGT TTCAACTACA GTGCCTATTC ACCCATGTGT
CCATCTTTTA AAGTTACAGG GGATCGGGTT CAGTCTCCAA AAGGTCGAGC GGGCTTGATG
CGAGAATGGT TACGCTTACT CGAATCCGAA GGCGTCGATG TCGACGCGCT TGCCAAATCC
AAGCCCCTGG GCTGGTTGCA GCGCACTCAA AACACATTAA AAGCGAGCCG TGAGTATGAT
TATTCACATG AAGTGATGGA GTCATTAAAA GGCTGTCTGG CCTGTAAGGC CTGCACATCT
CAGTGTCCGG TTAAGGTCGA TGTACCTAAG TTCAGGGCTC AGTTCTTTAA TATCTATTAT
CAAAGGTATC TGCGCCCGGT GAAAGACTAT CTCGTCGCGG GAATTGAAGA GAGCTTGCCG
TTAATGGCAA TAGCTCCAAG ATTAACCAAT GCCGTTTCTC AGAACCCGTT AAGTCAGTGG
GTGATAAAGA GGTCTTTGGG TTATGTGGAT GCTCCGGCAC TATCGATACC GACACTGAAA
CAACGTCTCG ATGGCCACGC CTGTCGTGGT TATGATCTCG AAGCGCTGCA GAATATCCCC
CAGGGTGAGC GCCAAAACTA TGTGTTGGTG GTACAAGATC CCTTTAATAG CTTCTATGAA
GCCGATACTG TCTATCACTT TATCAAGTTG ATTGAAAAAT TGGGCCTTAA GCCTGTGCTT
TTACCCTTTA AACCCAATGG CAAGCCGATA CATATTAAAG GCTTCCTCAG TAAATTTGCT
AAGACGGCTC AGTCTTCGGC CGATTTCTTG ACACAGGTTT TTGAGCTGAA TATGCCGATG
GTGGGTGTCG ATCCTGCTAT GGTGCTTTGC TACCGGGATG AATATCGTGA AGTGCTTGGG
GATAGTTGTG GTGATTTTAA TGTCAAGTTG TCTAATGAAT GGCTCTTAGA GGCTATCGAA
CATTGCGATA AGCTGACTGT TAATCAAGAT GCTTCAAATG AATTCACCTG GTTCAGCCAT
TGTACCGAGT CAACGGCAAA ACCTAATACC GCGACAGAGT GGAAGAAGAT ATTTAACCAC
TTCGGTGCAA AATTAGAGAC GGTGAGTCTG GGGTGTTGTG GCATGGCTGG TACTTATGGC
CATGAAGCCG AGAATCAAGA AAGATCTCGA GAGCTATTTT CCATGTCCTG GGAGCAAACG
TTAAAGTCAT TACCCAGTGA ACAGATCTTA GTGTCCGGTT ACTCTTGTCG AAGTCAGGTG
AAACGTTTCG GTGGTTTTAA GCCCAGACAT CCGGTTCAGG CGTTATTGGC GCTTTTATAA
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| Protein sequence | MLPIDKLPKL SHEQTLEPVY LAFLAALEQS DFTGDIDKRY SARLAQATDN SVYQFLPQAV
IYPRSQKDVR LVLMLATSAE FSQVVFSARG GGTGTNGQAL THGLVLDLSR YLNKVIEINP
EEAWVRVEAG VVKDALNDAL RPHGYFFSPD LSTSNRATMG GMVNTDASGA GSLVYGKTSD
HVIGLSSVLY DGSVLDTYSI TPKELENIDA VTSNPLGQTL LTSIANICSD KRPLIESRFP
KLNRFLTGYD LKNVWNDELT EFNLSRILTG SEGTLAVITE AKLNITPLPS VRMMVNIKYN
SFESALRHAP ELVKAKATVV ETIDSKVLNL AQQDIIWHSV SELIKDVPGS VIDGLNMVEF
AGEQEEVEAK VAALTSALET QIDESAGGLL GYQVTNDKKS INTIYAMRKK AVGLLGAAKG
RRKPLAFAED TAVPPEKLAD FIMEFRALLD SHQLQYGMFG HVDAGVLHVR PALDMCDIDD
ERLLKTVSDQ VAELTLKYGG LMWGEHGKGV RGEYGPSVFG EELYGVLEEV KGLFDPKNKL
NPGKLVAPKG TGALIYNVDS VKRGSFDRQI PMETREAFPD VMNCNGNGLC FNYSAYSPMC
PSFKVTGDRV QSPKGRAGLM REWLRLLESE GVDVDALAKS KPLGWLQRTQ NTLKASREYD
YSHEVMESLK GCLACKACTS QCPVKVDVPK FRAQFFNIYY QRYLRPVKDY LVAGIEESLP
LMAIAPRLTN AVSQNPLSQW VIKRSLGYVD APALSIPTLK QRLDGHACRG YDLEALQNIP
QGERQNYVLV VQDPFNSFYE ADTVYHFIKL IEKLGLKPVL LPFKPNGKPI HIKGFLSKFA
KTAQSSADFL TQVFELNMPM VGVDPAMVLC YRDEYREVLG DSCGDFNVKL SNEWLLEAIE
HCDKLTVNQD ASNEFTWFSH CTESTAKPNT ATEWKKIFNH FGAKLETVSL GCCGMAGTYG
HEAENQERSR ELFSMSWEQT LKSLPSEQIL VSGYSCRSQV KRFGGFKPRH PVQALLALL
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