| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1867 |
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| Symbol | |
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| ID | 5611638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2250576 |
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| End bp | 2251235 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932753 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001473606 |
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| Protein GI | 157375006 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00198288 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000309651 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCTAG AAAACTTAAA TATAATCATT GCAGATGATC ACCCGCTATT CAGAAATGCC
CTACGCCAAG CATTAGCTGG ATCCTTTACT AACACCCGCT GGTTTGAAGC CGACAGCGCC
GAAGCATTAC AGAGTCAACT TGAAAATGAT GAAGTTGAAT TCGACCTGGT CATGTTGGAT
CTACAGATGC CCGGTTCCCA TGGCTACTCC ACATTAATTC ATCTTCGCAC TCATTACCCG
GATCTCCCCG TGGTGGTTAT CTCGGCCCAC GAGGACAACA TCACCATTAG TCGAGCCGTA
CACTATGGCA GTGCCGGCTT CATTCCAAAA TTAGCTTCCA TGGAGACACT CGCTACGGCT
TTATCAGCCG TGCTTGAAGG GGACATTTGG TTACCCGCGG ATGTTGAACT GCAGTCAATA
GATGAAGATG CAACCGATCT GATGGCCAGT AAATTGGCCG ATCTAACACC TCAGCAATAT
AAGGTGTTAG GGATGTTTGC CGAAGGCTTA TTAAATAAGC AGATAGCCTA TGATCTCGGC
GTCTCTGAAG CAACGATTAA AGCCCACGCC ACTGCAATTT TCAGAAAACT TGGTGTGCGT
AATCGAACTC AGGCGGTCAT CTCACTTCAA CAGTTAGAGA TGGAAAAAGT CGAGCTATAA
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| Protein sequence | MKLENLNIII ADDHPLFRNA LRQALAGSFT NTRWFEADSA EALQSQLEND EVEFDLVMLD
LQMPGSHGYS TLIHLRTHYP DLPVVVISAH EDNITISRAV HYGSAGFIPK LASMETLATA
LSAVLEGDIW LPADVELQSI DEDATDLMAS KLADLTPQQY KVLGMFAEGL LNKQIAYDLG
VSEATIKAHA TAIFRKLGVR NRTQAVISLQ QLEMEKVEL
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