| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1865 |
|---|
| Symbol | |
|---|
| ID | 5611612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2248171 |
|---|
| End bp | 2248782 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640932751 |
|---|
| Product | fumarylacetoacetate (FAA) hydrolase |
|---|
| Protein accession | YP_001473604 |
|---|
| Protein GI | 157375004 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.601886 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0120347 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACACTG TCGTCGTCGG TAATCGAGTC GTTACACCCT CAAAAGTGGT CTGTGTGGGG
AGGAATTATG TTGAGCATAT CGAAGAGCTG AATAACGAGG TACCCGATGA TATGGTACTT
TTTATCAAGC CTAACTCTGC TATTGCCGAT GAACTGTTAA GCTTTCATCT CGAAGCGATT
CATTACGAGG CTGAATTGTG TTTTCTGGTT GAAGGTGGGG AGTTTGTTGC TGTAGGACTT
GGGCTGGATC TCACAAAACG AGGCTTGCAG AGCAAACTCA AGGCTAAAGG CCTTCCCTGG
GAACGGGCAA AATCCTTCGA TGGTTCCGCC GTTATAAGTG AATTTATTAA CATCCAAAAT
ATCAGTGATG GTTTAACCTT CGAGTTGTTT ATTAATGATA AGCCGACTCA ATCAGGGAGT
ATTGAACTGA TGATGAATAA GCCTTTGCAG ATCTTAGATG AAATTCAGAC ATTTATGAGC
ATGGAAGATG GCGATATTGT TATGACCGGT ACGCCAAAAG GAGTGGGAGA GGTGAATGCG
GGTGACGAGT TTAAAGTCAC ACTTAGCGAT AATGGTTCAA TACTGACACA AGCAAGCTGG
CGTGCCCTTT AG
|
|---|
| Protein sequence | MNTVVVGNRV VTPSKVVCVG RNYVEHIEEL NNEVPDDMVL FIKPNSAIAD ELLSFHLEAI
HYEAELCFLV EGGEFVAVGL GLDLTKRGLQ SKLKAKGLPW ERAKSFDGSA VISEFINIQN
ISDGLTFELF INDKPTQSGS IELMMNKPLQ ILDEIQTFMS MEDGDIVMTG TPKGVGEVNA
GDEFKVTLSD NGSILTQASW RAL
|
|---|
| |