| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1863 |
|---|
| Symbol | |
|---|
| ID | 5611670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2242605 |
|---|
| End bp | 2244557 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640932749 |
|---|
| Product | acetyl-CoA synthetase |
|---|
| Protein accession | YP_001473602 |
|---|
| Protein GI | 157375002 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | [TIGR02188] acetate--CoA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.579141 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.108064 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC AGTCTCTCTA CAAAGTTTCT AGCGAAATAG CTGAAAACGC ACATATAAAC
GAAGAACAAT ATAAAAAAAT GTATCAAGAG TCGATTGTTA ACCCTGAAGG TTTCTGGAGA
GAACACGGGC AACGCATCGA TTGGATTAAG CCTTATACAA AGATCAAGAA GACCTCCTTC
GACGATCATA ATCTCTCTAT TAACTGGTTC TATGACGGCA CGCTTAATGC CTCAGCAAAC
TGTTTAGACA GACATCTTGA GAAAGACTCC GACAAAGTCG CTATTATCTG GGAAGGTGAT
GACGCAAAAG ATCAACGTAC AATTACTTAT GGCGAACTTC ACTCAGATGT ATGTAAGTTT
GCTAACGCAC TACGTAGCCA AGGCGTAAGA CGTGGTGACA TAGTTACCGT TTATATGCCT
ATGGTGCCTG AAGCCGCTGT CGTCATGCTG GCATGTGCAC GTATAGGGGC CGTTCACTCG
GTTGTTTTTG GTGGCTTCTC ACCGGACTCC ATAGCATCAC GTGTTATCGA CGGTAAATCT
AAGGTGATTA TCACTGCAGA CGAAGGCGTT CGCGGCGGAC GCATTATTCC GCTTAAGGCT
AACATTGACG AAGCCTTGTC TCATCCGGAT GTAGACTGTG TGGAAAAAGT CATTGTTTTA
GAACGAACCG GCGGTGATGT AAACTGGGTC GAAGGTCGTG ATATTAAGTG GGAATCACTG
ATGGATACCG CTTCCGAGCA CTGTATCCCT GAAGAGATGG GCGCCGAAGA TCCTCTATTC
TTACTTTACA CCTCAGGTTC TACCGGCAAC CCTAAAGGTG TGCTGCATAC GACCGGCGGT
TACATGGTTT ACGCAGCCAT GACACACGAA TATGTTTTCG ACTATAAAGA CGGTGAAGTC
TATTGGTGTA CCGCCGATGT GGGCTGGATC ACCGGACACT CCTATATGGT TTATGGCCCT
CTGGCTAATG GCGCAACCGT CCTGATCCAC GAAGGTGTAC CCAATTACCC GACCCCAGCT
CGCTTGGGTG AGATGGTCGA CCGTCACAAG GTCAATATCC TCTATACTGC GCCGACACTA
ATTCGTGCAT TAATGGCCGA AGGTAAAGAG CAGTTTGCAG ATTTCGATGG CAGTTCATTG
CGCATCATGG GATCCGTGGG TGAACCCATT AACCCAGAAG CGTGGCGTTG GTATAACGAA
GTTATCGGTC ATGAACATTG CCCGATTGTC GATACCTGGT GGCAAACAGA AACCGGTGGT
ATTTTGATCA GCCCACTGCC TGGCGCAACC GATACCAAGC CTGGTTCTGC AACTCGTCCT
TTCTTCGGCG TTCAACCCGC TCTGGTTGAT AACATGGGGA ATATCATCGA CGGTGCAACC
GAAGGTAACT TAGTTATTCT CGATTCCTGG CCAGGACAGA TGCGAACGGT TTTCGGGGAC
CATGACAGAT TTGCCCTCAC CTACTTCAAG ACGTTCCGTG GCATGTACTT CACAGGCGAT
GGTGCCAAAC GAGATGAGGA TGGTTATTAC TGGATCACGG GTCGCGTCGA TGATGTGATT
AACGTATCGG GCCACAGACT CGGTACAGCA GAGGTCGAAA GTGCATTAGT GGCTCACGAG
CATGTAGCCG AAGCTGCCGT TGTTGGCTAC CCCCATGATA TTAAGGGTCA AGGCATCTAT
GCCTATGTCA CCTTAACCAA GGGAACCATC GAAACTGAAG AGCTTCGTCA GGAGCTCAGA
AAGTGGGTAC GTAAAGAAAT TGGCGCCTTA GCAACACCCG ATCTAATCCA GTGGGCCGGC
GGTCTGCCAA AAACCCGTTC GGGTAAGATT ATGCGTCGAT TCCTGCGAAA AATTGCTGCC
AATGAGGTCA CAAACCTTGG AGATTCATCG ACACTGGCCG ATCCGGCAGT TATCGACACC
TTGATTGAGT CCAGACTTAA CCGTAGCGAA TAA
|
|---|
| Protein sequence | MSTQSLYKVS SEIAENAHIN EEQYKKMYQE SIVNPEGFWR EHGQRIDWIK PYTKIKKTSF
DDHNLSINWF YDGTLNASAN CLDRHLEKDS DKVAIIWEGD DAKDQRTITY GELHSDVCKF
ANALRSQGVR RGDIVTVYMP MVPEAAVVML ACARIGAVHS VVFGGFSPDS IASRVIDGKS
KVIITADEGV RGGRIIPLKA NIDEALSHPD VDCVEKVIVL ERTGGDVNWV EGRDIKWESL
MDTASEHCIP EEMGAEDPLF LLYTSGSTGN PKGVLHTTGG YMVYAAMTHE YVFDYKDGEV
YWCTADVGWI TGHSYMVYGP LANGATVLIH EGVPNYPTPA RLGEMVDRHK VNILYTAPTL
IRALMAEGKE QFADFDGSSL RIMGSVGEPI NPEAWRWYNE VIGHEHCPIV DTWWQTETGG
ILISPLPGAT DTKPGSATRP FFGVQPALVD NMGNIIDGAT EGNLVILDSW PGQMRTVFGD
HDRFALTYFK TFRGMYFTGD GAKRDEDGYY WITGRVDDVI NVSGHRLGTA EVESALVAHE
HVAEAAVVGY PHDIKGQGIY AYVTLTKGTI ETEELRQELR KWVRKEIGAL ATPDLIQWAG
GLPKTRSGKI MRRFLRKIAA NEVTNLGDSS TLADPAVIDT LIESRLNRSE
|
|---|
| |