| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1859 |
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| Symbol | |
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| ID | 5611715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2235638 |
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| End bp | 2236366 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932735 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001473598 |
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| Protein GI | 157374998 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR02795] tol-pal system protein YbgF |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000136736 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAGTG CCGTATTAAC TACGGCAATT CTTCTCAGTA TCGGTGTGGC AACTGCTGCA
CCCGCTCCGG TTGCTGATGC AACCGGTGGT TCAAACGATG AAAGAATTGC GCGTTTAGAA
AGGATCTTAA AGGCGAAGCA GCAATCTGAG TTTCAGACGC AGCAACGCTT GGATGTGTTG
CAGCAAGAGG TGCTTGACCT GCGTGGTCTG AATGAGCAAC AAAGCTATCA AATTGAACAG
ATGTTGCAGC GTCAACGTCA GCTCTATGAA GATATTGCCA ATCTATCGGC CAAGCCAACG
CAGCTCCCTG CAGTCACTTC ATCTTCAGAG GTTAACCCTT CTGCATCATC TACGTTAGGT
GAAACAGCGA GCTATGAGCA TGCTGTTAAC TTGGTTCTTA AGCAAAGAAA GTATGATGAA
GCGATTCCGG CCTTTAGTGA TTTTATCAAG CAATACCCAA ATTCGACTTA TGCGGCTAAC
GCTAATTACT GGTTAGGGCA GCTTTTATAT AATAAAGGGG AGTTTGTCAC GGCTAAGAAG
GCGTTTGAAA CGGTAGTAAA TCAATTTTCT GAGTCTAATA AGCGCGGAGA CAGCTTGGTT
AAGCTAGGAA TGATCGCTGA GAAGACTGGA AATATCTCTT CGGCTAAAGT TTATTACCAG
AAAGTCGTCA AAGAGTACGC AAATAGTGCC GCAGCACGTA TTGCGAAGCA GCAGTTGGCT
GCTCTTTAA
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| Protein sequence | MKSAVLTTAI LLSIGVATAA PAPVADATGG SNDERIARLE RILKAKQQSE FQTQQRLDVL
QQEVLDLRGL NEQQSYQIEQ MLQRQRQLYE DIANLSAKPT QLPAVTSSSE VNPSASSTLG
ETASYEHAVN LVLKQRKYDE AIPAFSDFIK QYPNSTYAAN ANYWLGQLLY NKGEFVTAKK
AFETVVNQFS ESNKRGDSLV KLGMIAEKTG NISSAKVYYQ KVVKEYANSA AARIAKQQLA
AL
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