| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1857 |
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| Symbol | tolB |
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| ID | 5611713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2233716 |
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| End bp | 2235044 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932733 |
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| Product | translocation protein TolB |
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| Protein accession | YP_001473596 |
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| Protein GI | 157374996 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00113428 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGACTT TTGGAAAATG GCTCGTCTTA GGGCTGGTTA TATTAAGCTC ACCTGTAAGA
GCGGCACTGG ATATCGTGAT AACCGAAGGT ATCGATGCGG CGAGGCCTAT CGCAGTGGTT
CCTTTTGTCT GGCAAGGGCA GGGACCCGCA CCGCAGCAGA TCTCTGATGT CGTTATGTCT
GATCTGACTC GAAGTGGCAC GTTTAAAACC TTGGATGAGC TGAGTCTGCC GCAACGAAAC
ATTAGTGCTA TTTCTCAGTT TCAAGCTAAA GATTGGGCGA ATGTTGGTGC CGAAGCTGTG
GTCATGGGGG CGATTAAGCC TTATGGCGAA GATAAATATT TGGTGAGCTT CGACCTGGTC
GATCTTGTAA AAGCACAGAT GCAATCGGGT ACGGGCCCTC AGTCAAAACA GGAGTTCTTG
ATTGATAGTC GCGAAACCGT TATTTCATCT GCTCAGTTCA GACAATATGG TCACCGCATT
AGTGATATTA TCTACGAAAA GCTAACGGGT ATCCGTGGTG CTTTCTTGAC TCGCATTGCT
TATGTTGTCG TTAAGCATGG TGAGAAGTCA CCGTACCAGT TGATGATTTC AGATTACGAC
GGGCATAATG AACAGATGCT GTTACGCTCT CCGGAGCCCT TGATGTCACC ATCATGGTCG
CCCGATGGAC GACAGCTTGC TTATGTGAGT TTCGAAAACA AAAAAGCGGA AATTTTCATA
CAGGATATTT ATACGCAATC TAGAAGTAAA ATTACCAGCT TTGCCGGAAT CAATGGCGCC
CCTGTTTTTT CTCCCGATGG AAAAAAACTG GCTTTGACTC TGTCTAAAGA CGGCCAACCT
GAGATTTATG TCGTTGATAT CAGCACTAAA GCACTTAAAC GTGTCACAAA TCATTATGCT
ATCGATACAG AGGCATCTTG GTTTCCTGAT GGAAAATCTT TGATCTTCAC CTCGGAGCGC
GGCGGTCGCC CTCAAATTTA CAAAGTGACA CTGGCCTCTG GTAAGGTGCA AAGAATGACA
TTTGAAGGGG AGTGGAACTT AGGTGGTTCA ATTCTACCTG ATGGTCGAAG CATGATTTTT
GTGAACAGAA CAAATGGTAA ATATAATATT GCCAGAATGG ATCTGGAAAC ACGCTTTATG
CAGGTACTGA CATCGACACG TCTTGATGAA TCACCTAGCG TAGCACCAAA TGGAACTATG
GTGATTTACG GAACGACCTA CCAAGGTAAG CAAGTTTTAG CAGCGGTTTC AACGGATGGA
CGATTTAAAG CCCGACTGCC AACGGGTCAA GGGGAAGTTA AATCACCTTC TTGGTCACCT
TTTCTCTAA
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| Protein sequence | MKTFGKWLVL GLVILSSPVR AALDIVITEG IDAARPIAVV PFVWQGQGPA PQQISDVVMS
DLTRSGTFKT LDELSLPQRN ISAISQFQAK DWANVGAEAV VMGAIKPYGE DKYLVSFDLV
DLVKAQMQSG TGPQSKQEFL IDSRETVISS AQFRQYGHRI SDIIYEKLTG IRGAFLTRIA
YVVVKHGEKS PYQLMISDYD GHNEQMLLRS PEPLMSPSWS PDGRQLAYVS FENKKAEIFI
QDIYTQSRSK ITSFAGINGA PVFSPDGKKL ALTLSKDGQP EIYVVDISTK ALKRVTNHYA
IDTEASWFPD GKSLIFTSER GGRPQIYKVT LASGKVQRMT FEGEWNLGGS ILPDGRSMIF
VNRTNGKYNI ARMDLETRFM QVLTSTRLDE SPSVAPNGTM VIYGTTYQGK QVLAAVSTDG
RFKARLPTGQ GEVKSPSWSP FL
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