| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1855 |
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| Symbol | |
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| ID | 5611925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2232308 |
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| End bp | 2232742 |
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| Gene Length | 435 bp |
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| Protein Length | 144 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932731 |
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| Product | biopolymer transport protein ExbD/TolR |
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| Protein accession | YP_001473594 |
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| Protein GI | 157374994 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0848] Biopolymer transport protein |
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| TIGRFAM ID | [TIGR02801] TolR protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0126112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.766522 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGCAGG GCTATCAGCG AAAGCGCCGT CGTCCGGTGG CTGAGATCAA TGTGGTGCCA
TACATCGACG TGATGTTGGT CTTGTTGATT ATTTTCATGG TGACAGCCCC CATCGTGACT
CAGGGGGTTA AAGTCGATCT TCCTCAAGCC TCTTCGGAGG CTTTACCCGC AGACAGTAAA
CCACCCGTTG TGGCTTCAAT CGATGCCGAT GGGGATTATT TTCTGGATGT AGGGAGCTCA
AGCGATCGAC AAACACTCGA TTTAGAAGAG ATCGCAATCA GAGTTGGGGC CATTATTCAG
CTAGAGCCGG AGCGCCCGGT TGTGGTCAAA GCCGATAGAA GCATCGCTTA TGAGAAGGTC
ATTCAGCTCA TGGTGACCTT ACAAGGTGCC GGTGTGCCTT CGGTCGGGTT GATGACAGAT
TCACCTGAGG AGTAG
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| Protein sequence | MQQGYQRKRR RPVAEINVVP YIDVMLVLLI IFMVTAPIVT QGVKVDLPQA SSEALPADSK
PPVVASIDAD GDYFLDVGSS SDRQTLDLEE IAIRVGAIIQ LEPERPVVVK ADRSIAYEKV
IQLMVTLQGA GVPSVGLMTD SPEE
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