| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1854 |
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| Symbol | |
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| ID | 5611924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2231619 |
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| End bp | 2232308 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932730 |
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| Product | MotA/TolQ/ExbB proton channel |
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| Protein accession | YP_001473593 |
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| Protein GI | 157374993 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0811] Biopolymer transport proteins |
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| TIGRFAM ID | [TIGR02796] TolQ protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0235502 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.794171 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGAAGCTG ATATTTCGTT TATTGGATTA TTTTTACAAG CCAGTTTGTT GGTCAAGTTT
GTGATGTTAA CCTTACTGAG TTTGTCAGTG ATCTCATGGG CTGTGATTAT TCAGCGCCGC
CGCTTGTTAA CAACGGCGAA GCAAAGCTCC ATTAAATTTG AAGATAGATT TTGGTCTGGT
GTCGATCTCA ACAAGCTTTA TAAAGAAATA TCTGCTCGAC AAGATGGAAA TGAAGGTCTG
GAAGCCCTGT TCCATACCGG ATTTAAGGAA TATGCGAGAT TAAGTAAGTT AAATGGCAAG
GTCCCTGCGG CGGTGATGGA TGGTAGCTAT CGAGCGATGA GGGTATCTCT GTCAAGAGAG
ATGGAAAAGC TTGAAACTCA TCTTCCTTTG CTAGCGACCA TAGGTTCAAC GAGTCCTTAT
ATCGGCTTAT TTGGCACGGT ATGGGGGATC ATGAACTCCT TCATCGCCCT TGGTGCAGTC
GAAAATGCGA CGCTTGCCAT GGTCGCGCCA GGTATTGCTG AGGCATTGAT TGCTACGGCG
ATGGGCTTAT TTGCCGCTAT TCCTGCCGTT ATTGCTTATA ACCGCTTTAC CACTCAGGTC
GATAGTATTG AGATGTCCTA TGCAAACTTC ATGGAGGAGT TTTCAAGTAT TTTACACCGC
CAAGCGTACA GCGAAAAGGA TGAAGGCTAA
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| Protein sequence | MEADISFIGL FLQASLLVKF VMLTLLSLSV ISWAVIIQRR RLLTTAKQSS IKFEDRFWSG
VDLNKLYKEI SARQDGNEGL EALFHTGFKE YARLSKLNGK VPAAVMDGSY RAMRVSLSRE
MEKLETHLPL LATIGSTSPY IGLFGTVWGI MNSFIALGAV ENATLAMVAP GIAEALIATA
MGLFAAIPAV IAYNRFTTQV DSIEMSYANF MEEFSSILHR QAYSEKDEG
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