| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1840 |
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| Symbol | |
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| ID | 5612362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2215839 |
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| End bp | 2216585 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932716 |
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| Product | UMP phosphatase |
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| Protein accession | YP_001473579 |
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| Protein GI | 157374979 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
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| TIGRFAM ID | [TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.272737 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAATA TTATTTGCGA TATCGACGGC GTTTTACTGC ACAACAACAA ACTGATCCCA
GGGAGTGACA AGTTCATTGA CCGTGTTCTG GGACAAGGCA ACCCTCTGGT CATCTTAACC
AACTACCCGG TTCAAACCGG CAAAGATCTG CAAAACAGAC TCGGGGCTGC GGGCCTCAAT
GTCCCCGAAG AGTGTTTCTA CACCTCGGCG ATGGCAACGG CCGACTTTCT CAAGCATCAA
ACGGGCAATA AAGCCTTCGT TATCGGTGAA GGTGCCCTCA CCCATGAGCT CTATAAAGCG
GGTTTTACCA TCACCGATAT CAACCCCGAT TTTGTTATCG TCGGCGAGAC TCGTTCATAC
AACTGGGAGA TGATCCATAA GGCGGCGCGC TTCGTCGTCG AAGGAGCCCG CTTTATTGCA
ACCAACCCCG ATACCCATGG GCCATCCTTT AGCCCGGCCT GCGGAGCCTT GTGTGCCCCC
ATCGAGCGTA TCAGTGGTCG CATGCCCTTT TATGTCGGCA AACCCAGTTC ATGGATAATC
CGTTCAGCCT TAAACCATAT CGAAGGTCAC TCGGAAAATA CCATTATTAT CGGCGACAAT
ATGAAAACAG ATATTTTGGC GGGTTTTCAG GCAGGTCTGG AAACCGTACT GGTCACCAGC
GGCGTGAGTC AGCTCAATGA TATCGAGCTG GAGCCATTCA GGCCTAACCA TATCTTTAAC
TGCGCAGCCG ATATAGACAT AGTTTAA
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| Protein sequence | MKNIICDIDG VLLHNNKLIP GSDKFIDRVL GQGNPLVILT NYPVQTGKDL QNRLGAAGLN
VPEECFYTSA MATADFLKHQ TGNKAFVIGE GALTHELYKA GFTITDINPD FVIVGETRSY
NWEMIHKAAR FVVEGARFIA TNPDTHGPSF SPACGALCAP IERISGRMPF YVGKPSSWII
RSALNHIEGH SENTIIIGDN MKTDILAGFQ AGLETVLVTS GVSQLNDIEL EPFRPNHIFN
CAADIDIV
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