| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1801 |
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| Symbol | |
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| ID | 5612781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2170111 |
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| End bp | 2170947 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932676 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001473540 |
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| Protein GI | 157374940 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTATCA TGCACAAAGA GAGCATCCAA TATTGGCATA ACCCAATATT ACCTGAGGTT
GAGCTAAGCC GTGCAAACTT CAAACAATTC GAGTTTGACA GGCATGTACA TCTCGATTAT
CACATAGGTG TGGTTTCAAG CGGTTGTCAG CAATATTCCC ATAGAGGCAG TGCTTATCAT
TTGGGGCCGG GATTGATATC AAGCCTCAAT CCCGACGAAA CCCACAATGG TCAAAGCTAT
ACCTCTGAAG GCTACCAAGT CCATGTGATG TCTGTTCCAT ACCACTATGT CTCTCAAATA
AGTCAGGAGG TGAGTCAAAC TGAGGGCTTC TTTCATACCC CCTTAATCGA TGATAATCAT
CTATATCAGG CATTTTTAAA GCTTCATATG ATGTTAACTC AGCATCAAAG CAACCTCAGT
AGTTTGCAAA TAGAAACCAG CATGCTGGCC TTTACCACCG AGCTTTTTCT ACGCCACGGT
AATGTACCAG AGCAGGCCAC AGACAAAAAT AACGCCCTGT CTCAGTCCCA AATCAAGGAG
GTTATGGCCA TGTTTCATGA CGATCCTGGC CAGGAATTTC TACTCGAAAC ACTGGCAAAC
AGTGTTGGGT TAAGTAAATT TCAGTTTTTA AGGAGGTTTA AGCAATCGAT AGGAATGACA
CCACATGCTT ACCTCAAGAG AGTGCGACTC GAATATGCCA AAAAAGCCTT GATTAAAGGT
GGAAATGTCG CGGATATCGC ACATCGAGTC GGCTTTTTTG ATCAGAGTCA TCTCAACAAA
GCATTTAAGC AAGCCTATCT GATAACACCA GCCCATTTCC AGCGGCGTGT ACTGTGA
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| Protein sequence | MSIMHKESIQ YWHNPILPEV ELSRANFKQF EFDRHVHLDY HIGVVSSGCQ QYSHRGSAYH
LGPGLISSLN PDETHNGQSY TSEGYQVHVM SVPYHYVSQI SQEVSQTEGF FHTPLIDDNH
LYQAFLKLHM MLTQHQSNLS SLQIETSMLA FTTELFLRHG NVPEQATDKN NALSQSQIKE
VMAMFHDDPG QEFLLETLAN SVGLSKFQFL RRFKQSIGMT PHAYLKRVRL EYAKKALIKG
GNVADIAHRV GFFDQSHLNK AFKQAYLITP AHFQRRVL
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