| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1762 |
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| Symbol | |
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| ID | 5610653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2117629 |
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| End bp | 2118543 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932632 |
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| Product | dihydrodipicolinate synthase |
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| Protein accession | YP_001473501 |
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| Protein GI | 157374901 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
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| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000163874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGTAA ATTGGCAAGG TGTATTCCCG GCAATCTCAA CACAATTTAA CGATGATGGT
TCTATCAACT ATGAATCGAA TGCACGCATG CTCGAAGATC TCATTAACGA TGGTATCGAC
GGCATTATTG CGCTGGGAAC GATTGGTGAA AATGCCTCTT TGAGCAGTGA AGAGAAGCGT
GAATTTATCA AGCATACCGT TGAAACCGTC AACGGTCGTA TTCTGGTACT CTCGGGTTGT
ACTGAAAACA CTGCTGAGCA AGCCTCTAAG TACGCTCAAG ATGTCGAGAA GTTAGGTGTC
GATGGTCTGA TGTTACTTCC AGCCATGGTC TATCGCGGAA CGGATCGTGA AGTTGTCGCC
CATTATCAGT ACGTCGCTCG CTCAACTTCG CTGCCTATCA TGATCTACAA CAACCCTGTT
GGATATGGCG TCGACATCAA TCTTGAGATG ACGGCCACTC TTGCCGAAGA GGAGAACATC
GTCGCGATTA AAGAGTCGAC GACCGATACT CGTCGTCTGA CAGAACTGCA GAGCCGTTTC
GGTGACCGCT TCAGTATTCT TTGTGGTGTG GATGATATTG CCCTTGAAAG TATCTTCCTC
GGTGCAACGG GTTGGATCTC AGGCCTGACT AACGTCTTCC CTCGTGAATC TGTAACACTT
TTCAAGTTGG CTCGTGCCGG CCGTATCGAA GAAGCCCGTG AGATCTACCG TTGGTTCATG
CCTCTGCTAC GCTTAGACAC AATTCCGACT CTGGTTCAGT GCATCAAATT TGCAGAGCAA
ATCGTCGGTC GCGGCTGTGA AAATGTCCGT ATGCCGCGTA TGACCTTAAT TGGAGATGAA
CGTGCATACG TTGAAACCCT GATCAAGGAA GCGATGGCAA CCCGCATCGA TCTGGATAAG
TACAACTTAG ACTGA
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| Protein sequence | MKVNWQGVFP AISTQFNDDG SINYESNARM LEDLINDGID GIIALGTIGE NASLSSEEKR
EFIKHTVETV NGRILVLSGC TENTAEQASK YAQDVEKLGV DGLMLLPAMV YRGTDREVVA
HYQYVARSTS LPIMIYNNPV GYGVDINLEM TATLAEEENI VAIKESTTDT RRLTELQSRF
GDRFSILCGV DDIALESIFL GATGWISGLT NVFPRESVTL FKLARAGRIE EAREIYRWFM
PLLRLDTIPT LVQCIKFAEQ IVGRGCENVR MPRMTLIGDE RAYVETLIKE AMATRIDLDK
YNLD
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