| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1761 |
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| Symbol | |
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| ID | 5610652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2116462 |
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| End bp | 2117463 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932631 |
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| Product | hydroxyproline-2-epimerase |
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| Protein accession | YP_001473500 |
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| Protein GI | 157374900 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3938] Proline racemase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000415144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAAAG GTACCTTCTT TTGCGTCGAT GCTCATACCT GCGGCAACCC GGTTCGTTTG
GTCACCAGTG GCCATCCGAA TCTTAAGGGT CGCAATATGA GTGAAAAGCG ACAAGACTTT
CTGAACCACT ATGATTGGAT CAGAAAGGCA TTAATGTTTG AACCCAGAGG CCACGATATG
ATGTCGGGGG CTTTTTTGTA TCCTCCCTGC AGTGACAATG CCGATGCCTC AATCCTCTTT
ATCGAAACCA GTGGTTGCCT GCCCATGTGT GGACACGGCA CCATCGGCAC CATTACCGCC
GCCATCGAAT CGGGTCTGTT AACGGCCAGA GAGCCGGGCA AACTGACGAT AGATGTCCCC
GCGGGTCAGA TTAATATCGA GTATCAGCAA ACCGGTGAAA AAGTCGACTG GGTCAAGATC
TATAATGTCC CGGCTTACCT GGCTCACCGC GATGTGATCT TAGATATTCC AGGCCTTGGG
CCACTTAAAG TCGATGTATC TTACGGTGGT AACTACTATG TCATCGTCGA ACCTCAGACC
AATTTTCCCG GTTTAAGACA GTGGACCGCC GCAGATATTC TTCGCTGGAG TCCCGTCGTT
CGTCAAATTG CAGATGAACA ACTCAGCTGT GTTCATCCGG ATGATCCTAC CGTCAACGGT
ATCTCTCACG TGCTTTGGAC GGGTAATACC ATCAGTGAAG GTTCCGACGG GGCTAATGCC
GTTTTCTATG GTGAGAAAGC CATCGACCGC TCCCCTTGCG GCACTGGTAC CAGTGCCAGA
CTCGCTCAGC TTTACGCCAA AGGTCAACTC GAGGTCGGTG CCCAATACAC CCATGAAAGC
ATCATAGGCA GTCAGTTTAT CGGCCGGATA GAAGCCGCTA CAACCGTAGG TGACAACAAA
GGCATCATGC CCAGCATTCA GGGATGGGCC AGGATCACCG GAAAAAATGC CATCACAGTC
GATGACAGCG ACCCCTATGC CTTCGGGTTT CAAGTGGTAT AG
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| Protein sequence | MLKGTFFCVD AHTCGNPVRL VTSGHPNLKG RNMSEKRQDF LNHYDWIRKA LMFEPRGHDM
MSGAFLYPPC SDNADASILF IETSGCLPMC GHGTIGTITA AIESGLLTAR EPGKLTIDVP
AGQINIEYQQ TGEKVDWVKI YNVPAYLAHR DVILDIPGLG PLKVDVSYGG NYYVIVEPQT
NFPGLRQWTA ADILRWSPVV RQIADEQLSC VHPDDPTVNG ISHVLWTGNT ISEGSDGANA
VFYGEKAIDR SPCGTGTSAR LAQLYAKGQL EVGAQYTHES IIGSQFIGRI EAATTVGDNK
GIMPSIQGWA RITGKNAITV DDSDPYAFGF QVV
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