Gene Ssed_1747 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1747 
Symbol 
ID5610150 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2097541 
End bp2100960 
Gene Length3420 bp 
Protein Length1139 aa 
Translation table11 
GC content51% 
IMG OID640932617 
Producthypothetical protein 
Protein accessionYP_001473486 
Protein GI157374886 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000564232 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCTGGTT CATTTCTGTC GTTCTTATCA TGTAAGTCTA CGATTAACAG ACTCTTTCTT 
AGTGGGCTAC TCTGTTCGCT GCTTGTTACT GCACCATTTG AAGGGCGGGC GGAAAACCTG
AGTCGTGGTC CCTATCTGCA GCTGGGCACG CAACACAGCA TGACGGTTAA GTGGCGAACC
GATGTCTCCA GCCCATCGAA TGTGACCTAC GGTACAGAGC TGAATGACTT AAGTGGTAAT
GCATCCGGGG CAGATGGGTT GGATCATAGT GTGCTGATTT CGGGTTTACT GCCTGATACC
CGTTACTACT ATGCTCTGCT CGATGAAGCG GGGAGCGTCC TTGCCGGTGG CGATAGCAGC
CATTTCTTCT ATACCTCCCC AATTATTGGT AATACAGAGC TTACCCGAGT ATGGGTTATC
GGTGATTCCG GCACAGCGGA TAGTAATGCC CGAGCCGTTC GAGATGCCTA TCGAGCCCGG
ACAGGTAATG AATACACAGA CCTTTGGATC ATGCTGGGTG ACAATGCCTA TTCAACCGGC
ACCGACAGCG AGTATCAGGC CGCGGTGTTT GATCTTTATC CTGAGCTGTT GAAGCAATCT
CCACTCTGGG CAACCTTAGG TAATCACGAT GGGGCAAGCG CCGATTCTGC CTCACAAGAT
GGTCCCTATT ACGATATTTT TACCTTGCCA ACCAACGCTG AAGCGGGAGG CGTTCCATCG
GGAACGGAAG CCTATTACTC TTTCGATTAT GGCCAGATCC ACTTTATCTG CCTCGAGTCT
CACGAAACAG ACAGGGCAAG TAGCGGTGCC ATGTTGACCT GGCTGGTGAA TGACCTTGAG
GCCACCAGTC AGCCTTGGAT CATCGCCTAC TGGCATCACC CTCCCTACAC TAAAGGCTCT
CATAACTCGG ACTCAGAAAA TCGCTTGATA GAGATGCGAG AAAATGCGCT GCCAATCCTG
GAGTCTTACG GCGTGGATCT TGTCCTGTCC GGTCACAGCC ACTCCTATGA GCGTTCATAC
CTTATCGATA GTCACTATGG CAGTTCAACG ACGTTCAGTG AGGTGATGAA ACTCGATGGT
GGCGATGGTA AGAAAACAGG AGATGGCAGT TATCAGAAAG CAATTCAGAT CCAACAGGCC
AATAACGGCG CCGTCTATGT GGTTGCGGGA AGTTCAGGCA AGATCTCGGG TGGAGCGCTT
AACCACCCGG CCATGTATGC TTCAATCAAT AGTCTGGGGT CGGTCGTTGT CGAGGTGATA
GAAAATGAGC TGACGGCTAC TTTTATCGAT AATACCAATG CCGTTCAAGA TGCATTCACC
ATCACTAAGG GACCGGATAT TCTTCCACCT GAATTGGTGT CGGTTGAGGC GATTGATACG
ACACACATCA GGGTTAATTT TTCAGAAAAT ATCGGCTTGG CTAGTGCAAC TGATATTTTG
AATTACCAAC TTGATAATGA CGCCGTTGCG CTCTCGGCTC AGCAGAGTAC AAATCAGCGC
GAAGTCACTT TAACTACCTC GGCCCTGATC CCTTCACAGC TCTACACCCT GACAGTCAAT
GACATCGAAG ATATTTCGCT TAACACAATA GTCGCCGATA CCCAGCAGAC ATTTACCTAT
ATCAATCTAA TCACCGTCGC ATTTCAGGAT GGAGTCAGTC CTGCCGCGGG TTATGCCGGT
ACCAGTGATG CCTATATCAG TGAGCTCAAT AGTGGCGCTA ACTATGGTAC GAGTTCGAAC
CTCTATATCG ATGGTGATGA TGGCGGCGGA GTCGATCTTT CGAGTCTGCT TAGATGGGAT
ATTAGTCAAA TTCCGGTTAA TGCCACTGTC GAGTCGGCGG CGATCACCTT AGATGTGTTT
AACCCATCGG GTAGCAGCTA TGATGTTTTC GCGCTTTATT CTCCTTGGGT CGAAGCTGAA
GTGACCTGGC AGCAGTATAG AGCCGGTATG GCTTGGGCGT CGGCTGGTGG ACAGGGCGGA
AGCGATCGCG GCTCGATTTC CCTCTCTTCA ATTTCACCCT CGACTGGACT GTTCACGGCT
AACCTCAATG AGGCCGGCAT TGCTATCGTT CAGTCCTGGC TGGATGGTGC CGTCAACAAT
AATGGCTTTG TCATCGCAAA CACGTCGGCT TCAGATGGTG CCGATTTTTA TTCGAGCGAG
TCGACGAATT TCCACCCTAA ATTAACATTG GTTTACTCCC AACCTGAGCC AGAGGGGGAT
AGCGAAGCAC CGAGCCGGGT TGAAAACCTG CAACTCAGTT CAGTGACCAC GGGCAGTGCA
TCTATGAGCT GGAGTGCGGC AACCGATAAT GTCGCTGTGG CCGGCTATAA GATACTGCGT
GACGATGTGA TGATAGCTAC ATCATTGATA ACGAGTTTCG ATGATGGTGG TTTAACACCA
GCAACAGATT ATGCCTATAA GGTGATCGCT TTCGATGGTG CCAATAACGA ATCTATTCCC
AGCGCGCCAC TAAATGTCAC GACCAACGCC ATAGTCGCCT CGGTTCATGT CGAGCAGATA
GCCATGGCCA TCGAGTCGGT AAACAGGAAA AAACTCAGGG CACAGGCTGA TATCTCGGTC
GTCGATAATA TGGGCTCAGG TATTGGTAAC GTCGCGGTGC TGGGGAGTTG GACAGGCCTG
TCGACACTGT CTGTATCTGG CGTGACATCG AGCGAGGGCA AGGTCAACTT CGGCTCGGGT
AACGCAAACA AAAATAGCAG TGGTCAATTT ATCTTTACCG TCAACTCTCT GAGCCTCACG
GGCTACACCT ACCTCGAGAG TGACAATATT GAGACCAGTG ACTGTATTCA ATCCGATGCC
ACAGCCTGTG GAGGAATTAG TGCACCAACG GATCTCAGTG CCAGTTTCAA TGGCAGTCAG
GTTGAGCTGA GCTGGTCAGG CGTGGTTCAA GCGACCAGCT ATAACGTCTA CCGTTCGCTC
GATTCCGGCG GCTATAACTC GCCCGTTCAA TCGGACGTGA CGAATTATCT CGATATTTCG
GTAGCGCCTG ATACCCGCTA TTACTATGTT ATATCGGCCA GCGATGGCGT CGAAGAGTCG
CCTGTTTCAC AAGAGGTCTC TGTGACGACT ATCTCTGCGC CTACGGTATT ACAGGCCGAT
GATGTCTCAC TCTCTCTTAA GAGGAAGGGA CGTAGCTACG ATATTACGGC TCAGGTATCC
GTGATAGATG ATTTGGGAAG CCTAGCTGCG GGCGCCAAGG TGAGCGGTAA CTGGACCTTA
GCCGACAGTA CGACGTCGAT GGTATCAGGG ACTACCGGGG CAAACGGTTC CCTAAGTTTG
AAGCTGTCTA AGGTGGCGGC TCAAAGCGGC GACGTTTTCG CTTTTACCGT CACAAATATT
GAGCGAGAAG GCGATAGCTT CAACGATGTC ATGACCTCGG GTTCGGTAAC GGTGCCTTAG
 
Protein sequence
MPGSFLSFLS CKSTINRLFL SGLLCSLLVT APFEGRAENL SRGPYLQLGT QHSMTVKWRT 
DVSSPSNVTY GTELNDLSGN ASGADGLDHS VLISGLLPDT RYYYALLDEA GSVLAGGDSS
HFFYTSPIIG NTELTRVWVI GDSGTADSNA RAVRDAYRAR TGNEYTDLWI MLGDNAYSTG
TDSEYQAAVF DLYPELLKQS PLWATLGNHD GASADSASQD GPYYDIFTLP TNAEAGGVPS
GTEAYYSFDY GQIHFICLES HETDRASSGA MLTWLVNDLE ATSQPWIIAY WHHPPYTKGS
HNSDSENRLI EMRENALPIL ESYGVDLVLS GHSHSYERSY LIDSHYGSST TFSEVMKLDG
GDGKKTGDGS YQKAIQIQQA NNGAVYVVAG SSGKISGGAL NHPAMYASIN SLGSVVVEVI
ENELTATFID NTNAVQDAFT ITKGPDILPP ELVSVEAIDT THIRVNFSEN IGLASATDIL
NYQLDNDAVA LSAQQSTNQR EVTLTTSALI PSQLYTLTVN DIEDISLNTI VADTQQTFTY
INLITVAFQD GVSPAAGYAG TSDAYISELN SGANYGTSSN LYIDGDDGGG VDLSSLLRWD
ISQIPVNATV ESAAITLDVF NPSGSSYDVF ALYSPWVEAE VTWQQYRAGM AWASAGGQGG
SDRGSISLSS ISPSTGLFTA NLNEAGIAIV QSWLDGAVNN NGFVIANTSA SDGADFYSSE
STNFHPKLTL VYSQPEPEGD SEAPSRVENL QLSSVTTGSA SMSWSAATDN VAVAGYKILR
DDVMIATSLI TSFDDGGLTP ATDYAYKVIA FDGANNESIP SAPLNVTTNA IVASVHVEQI
AMAIESVNRK KLRAQADISV VDNMGSGIGN VAVLGSWTGL STLSVSGVTS SEGKVNFGSG
NANKNSSGQF IFTVNSLSLT GYTYLESDNI ETSDCIQSDA TACGGISAPT DLSASFNGSQ
VELSWSGVVQ ATSYNVYRSL DSGGYNSPVQ SDVTNYLDIS VAPDTRYYYV ISASDGVEES
PVSQEVSVTT ISAPTVLQAD DVSLSLKRKG RSYDITAQVS VIDDLGSLAA GAKVSGNWTL
ADSTTSMVSG TTGANGSLSL KLSKVAAQSG DVFAFTVTNI EREGDSFNDV MTSGSVTVP