| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1738 |
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| Symbol | |
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| ID | 5609821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2087653 |
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| End bp | 2089665 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932608 |
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| Product | DNA ligase (NAD(+)) |
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| Protein accession | YP_001473477 |
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| Protein GI | 157374877 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000265236 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000308694 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACGCTA TTCAAGAAGA GATTAAACAA CTGACCTCAG TGCTTAATGA GCACAACTAT
CGCTACTATG TCGATGATGC ACCCAGTGTA CCGGATGCTG AATATGATCG TTTAATCAAC
CGATTAAAGC AGCTTGAAGC CGAAAATCCA GAGCTTTGCC TGCCGGACTC ACCGACACAG
AGAGTCGGGG GCGTGGCGTT AGCTAAGTTC AATCAAATCA CTCACCTTAA ACCTATGCTG
AGTCTGGATA ACGTCTTCAG TGAAGATGAG TTTGATGCCT TCTATAAGCG TATCAGCGAC
AAAACCAGTG AGACGCCGAC TTTTTGCTGT GAGCCTAAAC TCGATGGTTT AGCGGTCAGT
ATCCTCTATC GCGACGGTGT CTATGAACGA GCGGCGACCC GAGGCGATGG TAGTGTCGGC
GAAGATATCA CCGAAAATGT GCGTACCATT CGCTCTATTC CGCTTAAGTT ACGTGGCAGC
GATTTTCCAC CTCTGCTCGA AGTCAGAGGC GAGGTGATCA TGCCGAAAAA AGCCTTCGAC
TCACTCAACG ACAGAGCCAG AGCGAAAGGT GAGAAGCTAT TTGTTAACCC GCGTAATGCC
GCCGCCGGTA GCCTACGTCA ACTGGACAGT AAGATAACTG CGAGTCGTGC ACTGGGGTTT
TATGCCTATG CCTTGGGCGT CGTCGAGCCG GAGAGCTGGC CTTTAGGCAA GGGACATCAC
GAGCAGTTGA TGCAGCTTAA GTCCTGGGGC TTCCCGGTGA GCAGTGAAGT TAAGCTGTGC
GGTGATGTCA AAACTGTGCT CGATTATTAT GCCGATATTC TCGAACGCCG TGAGGCGCTG
GACTATGAAA TTGACGGCGT GGTGATTAAG GTCGATAGCA TTGAGCATCA GCTGCAATTG
GGCTTCGTGG CGAAAGCCCC CCGATGGGCA ACGGCATTTA AATTTCCTGC TCAGGAGGAG
ATGACCCTGC TCGAAGGCGT TGATTTTCAG GTCGGACGAA CCGGAGCGGT GACACCCGTG
GCCAGGCTCA AACCCGTGTT TGTCGGCGGC GTGACTGTGT CTAATGCGAC GCTGCATAAT
GCCGATGAAA TTGCCAGACT CGGCGTGAAA GTGGGTGACA CAGTAATAGT GCGCCGCGCA
GGTGATGTGA TCCCTCAGGT TGTGGCTATC GTCGCCGAGA AGCGTCCGGT CAGTGCAAAC
GATATCCTGT TTCCTCAGAC CTGTCCTGTG TGTGACAGCA TGGTTGAACG CACCGAGGGA
GAGGCGGTTG CAAGATGTAC CGGCGGTCTG TTCTGTGAGG CGCAGCGTAA AGAAGCCATT
AAACATTTTG CATCCCGTAA GGCCCTTAAT GTCGATGGTA TGGGTGATAA GGTGGTTGAG
CAGCTTATCG ATAAAGAGTT GGTGGCAAGT CCCGCCGATC TCTTCAGATT AACCGCCTCT
GCGATGACTA TGTTAGACAG AATGGGGATG AAATCGGCCA CTAAACTGGT GGCTGCTATC
GAAGACGCTA AGCAAACTAC CTTTGCCCGA TTCCTATATG GGTTGGGGAT CCGTGAAGTG
GGAGAAGCGA CGGCGGCGAA CTTGGCCAAC TACTTTAAAA ACCTGGATAA GTTAAAGTCT
GCCGATGCGG ATGAGTTTAT TAAGGTGGAT GACGTCGGCG CGATTGTCGC CCAGCACCTG
ACCTACTTTT TTGCCCAGCC TCACAACCTA GAGGTGGTCG ATAACCTGGT ACAAGCTGGT
GTTCATTGGC CCGAGATCGA AGAGGTAGCC GAAGAGGCAT TGTCTCTTAA GGGCCAGACC
TGGGTGCTGA CAGGAACCCT GACCAAGCTA AATCGTAACG ATGCTAAAGC TCAGTTACAG
GCGCTTGGCG CTAAAGTTGC CGGTAGCGTC TCTAAGAATA CCGATTGCTT AGTAGCGGGC
GAGGCGGCGG GGTCAAAGCT GACCAAGGCT CAGGACTTGG GCGTTAAGGT GCTCGATGAG
GATGGTCTGT TAGCCGTGCT TGCTGGCGAG TAG
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| Protein sequence | MHAIQEEIKQ LTSVLNEHNY RYYVDDAPSV PDAEYDRLIN RLKQLEAENP ELCLPDSPTQ
RVGGVALAKF NQITHLKPML SLDNVFSEDE FDAFYKRISD KTSETPTFCC EPKLDGLAVS
ILYRDGVYER AATRGDGSVG EDITENVRTI RSIPLKLRGS DFPPLLEVRG EVIMPKKAFD
SLNDRARAKG EKLFVNPRNA AAGSLRQLDS KITASRALGF YAYALGVVEP ESWPLGKGHH
EQLMQLKSWG FPVSSEVKLC GDVKTVLDYY ADILERREAL DYEIDGVVIK VDSIEHQLQL
GFVAKAPRWA TAFKFPAQEE MTLLEGVDFQ VGRTGAVTPV ARLKPVFVGG VTVSNATLHN
ADEIARLGVK VGDTVIVRRA GDVIPQVVAI VAEKRPVSAN DILFPQTCPV CDSMVERTEG
EAVARCTGGL FCEAQRKEAI KHFASRKALN VDGMGDKVVE QLIDKELVAS PADLFRLTAS
AMTMLDRMGM KSATKLVAAI EDAKQTTFAR FLYGLGIREV GEATAANLAN YFKNLDKLKS
ADADEFIKVD DVGAIVAQHL TYFFAQPHNL EVVDNLVQAG VHWPEIEEVA EEALSLKGQT
WVLTGTLTKL NRNDAKAQLQ ALGAKVAGSV SKNTDCLVAG EAAGSKLTKA QDLGVKVLDE
DGLLAVLAGE
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