| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1716 |
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| Symbol | |
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| ID | 5611592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2059048 |
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| End bp | 2061729 |
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| Gene Length | 2682 bp |
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| Protein Length | 893 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932586 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_001473455 |
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| Protein GI | 157374855 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.716976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000145025 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTGCCTA ATTCTAAATT GGCTAAAGCT GTACGTTTTG CATTAATTAC TGGGGCAGCA
ACTGCCGCAT TAAGTGCACC AGCAGTCTAT GCCGCAAGTG ATGATGAATC AGTAGAACGT
ATTCAAGTTA CAGGTTCTCG TATTAAGCGT ACCGATATGG AAACAGCGAC GCCTGTTACC
GTAATGAGCG CTGATGATAT GGCGAAGCAA GGCTTCACCA ATATTCAAGA TGCACTAGAG
AGTCTAACCT CTACTACAAG TGCGATGACA ACCCAGTCAG TTCATGGTTT CACACCTGCA
GCATCATCTA TCAGTCTACG TGGCGCTGGC GCTAACCGCA CACTAACACT TATCGATGGT
AAGCGTTTAA ACCAGTACCC TAAGCCTGCA GGCGGTACTG ATAACTTCGT CGATACAGCA
AACCTTCCAA TGGAAGCCGT TCAGCGTATC GAGATCCTTC AATCAGGTGG TTCTGCAATT
TATGGTGCCG ATGCTGTCGG TGGTGTAATT AACATCATCC TAAAGAAAGA TTTCGAAGGT
GTTGCACTTA AATATCGCCA TGGTGATACA TTTGAAGGTG GCGGAGGAAG TGATCGTGTT
GCACTATCTC TAGGTTCATC ATCTGATCGT GGTAACGTTT CAACTTTCAT CGAATTTACA
ACTAACGAAC AGTTAAAAGC AACTGATCGT GAAAACTTCG GCCTTCATAC CGATAAAGTT
CCTTACAGCG AATACTCACA GTACAGTTCA TACGGTGCAC GTATCGCAGG TGGCAGTGGT
GCTAAAGCTC TGACTCCTGA AGAGTGTACT GCAGGCGGTT GGTTCTGGGA TGCAGCTCGC
AGCATCTGTG GTTTCGATCG TTCACAGTGG CGTGACCTTG AGCCTGAAAG CACACGTTTC
ATCAGCTCAA CAAATTTCAA CTATGAGCTT GCCGATGACG TGACCTTTGT TGGTCGTCTT
GATTTTGCAG AAGCAAAATC GACTACCCGC ATCGAGCCTA TGGCAATCAA CGACTATGAC
ATCAATGTCG CCGGTGACAA CGTTACCGTT AGTGCAGGTG ATCTCAGCAA GACATTCAAC
AATAAAGCAA CCGCGCTAGG TGGTGACTTT GCCAATGCTG AAGATGGCGA TTACTACTAC
GTCCGCCGTC TACATGAGTT TGGCAACCGT ATGGGTGAAA CAAAAACCCG TAACTACTTC
TTCACAGCCG GTCTTCAAGG TGTTGTATTT GATGAATATG ATTGGGACGC CTCAGTTAAC
TATGGCCGTA CTAACGTCGA CGTTTTCCGT GGTGGATACG CGACTATAGC TGGTATGTTT
GACTACATCA CAGATGGTGA AAATGGCAAC TCACTGCTTA AGAACATGAA TGCTGAAGAT
GTAGAGGCTG CTTCTTACAC ACCTTTCGAG CGAGCTCAGT CAACTCAGAA AAACGTACAG
GCAAACATCA CAGGTACTGC ATTTGAAATG CCTGAAGGGG ACGCACTGTT CTCATTTGGT
GCAGAATACA CAGAGCAAGA TTACGAAACT GAGTCAGATT CTGAATCTGC CAAAGGTAAC
ATCTTGACTA CCGGTGGTTC TTCAGGTGCA GGTGATCGCT CTTACTGGGC AAGTTACGCA
GAACTAAGCA TTCCAGTACT TGACGTGCTG ACTATCGATG CGGCAGTTCG TTATGATAAC
TACAGTGATT TTGGTGGTAA TTTATCACCT CAAATCGCTA TTGAATATCG TCCAATGGAT
GAGCTACTTG TTCGTGGTTC TATCAGTTCT GTATTCCGTG CACCAGATAT GCACCGTGTG
TATGGCGATT CGACCAATGG TTTCACTACA GTAATTGACT TCAAGCAGTG TCTGGCCATG
GGCGGCACAC CTGCTCAAAC TCATCCAGAT CCAAGGATCA ACGAGATATG TAATGAACTA
CATATCGACA CGACTACTGG TGCTAACAAA GAACTTGAAG CAGAAACTGG TTACACTGCA
AACATAGGTG CGGTATGGGG CGGTGATTCA CTCAATGCTT CATTCGACCT TTGGGAGTGG
AAGCTTGACG ATATGGTTAG CGATATTAGC GCCAGCAAAG CAGCACGTGA ATATGAACAA
TATGAAGACA TGATCACTCG TGATGATGAT GGCACCATTA CTCATGTTGA CGCGGTTGCA
CAAAACCTTG CATTCCAAAA AGTTCGTGGT ATCGACATGA CTGCCGGTTA CGCTTGGGAT
CTTAACGAGT TTGGTGAGCT AAAACTGAAC TTCAATGGTA CCTACATTCT ATTGTCTGAA
GGCCAACTAG CGCCAACGGA TCCTGTAGAA GATGATATCG ATAATGGCGG TCTACCTCAG
TACCGTGCGA ACTTAGTCCT TGGTTACTTC ATCGAAGACT TCGAAACAAC ACTTGGCGCG
TACCATACAG CTCGCATGCA CGGTATGCAG TACAAGTCAT TCAAAGAGTC TGCGGGTGAT
GACTTTGACG AAAGTGCACA TGAAGTTGCT TCACAGACTA AGTGGAACCT GACTGCTGGT
TATAGCATCA CTGATGATAT AAAAGTAAAA GCTGGTGTTG TTAACCTGTT TGACGCTGGT
CCAAACTTTG ATCCAACTGC AACTAGCTGG CCTCACTACC AGCGTTCAGT ATATAACGCA
CGTGGTCGTG AGTGGTTCTT AGAAGGTGAA GTTAAGTTCT AA
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| Protein sequence | MLPNSKLAKA VRFALITGAA TAALSAPAVY AASDDESVER IQVTGSRIKR TDMETATPVT
VMSADDMAKQ GFTNIQDALE SLTSTTSAMT TQSVHGFTPA ASSISLRGAG ANRTLTLIDG
KRLNQYPKPA GGTDNFVDTA NLPMEAVQRI EILQSGGSAI YGADAVGGVI NIILKKDFEG
VALKYRHGDT FEGGGGSDRV ALSLGSSSDR GNVSTFIEFT TNEQLKATDR ENFGLHTDKV
PYSEYSQYSS YGARIAGGSG AKALTPEECT AGGWFWDAAR SICGFDRSQW RDLEPESTRF
ISSTNFNYEL ADDVTFVGRL DFAEAKSTTR IEPMAINDYD INVAGDNVTV SAGDLSKTFN
NKATALGGDF ANAEDGDYYY VRRLHEFGNR MGETKTRNYF FTAGLQGVVF DEYDWDASVN
YGRTNVDVFR GGYATIAGMF DYITDGENGN SLLKNMNAED VEAASYTPFE RAQSTQKNVQ
ANITGTAFEM PEGDALFSFG AEYTEQDYET ESDSESAKGN ILTTGGSSGA GDRSYWASYA
ELSIPVLDVL TIDAAVRYDN YSDFGGNLSP QIAIEYRPMD ELLVRGSISS VFRAPDMHRV
YGDSTNGFTT VIDFKQCLAM GGTPAQTHPD PRINEICNEL HIDTTTGANK ELEAETGYTA
NIGAVWGGDS LNASFDLWEW KLDDMVSDIS ASKAAREYEQ YEDMITRDDD GTITHVDAVA
QNLAFQKVRG IDMTAGYAWD LNEFGELKLN FNGTYILLSE GQLAPTDPVE DDIDNGGLPQ
YRANLVLGYF IEDFETTLGA YHTARMHGMQ YKSFKESAGD DFDESAHEVA SQTKWNLTAG
YSITDDIKVK AGVVNLFDAG PNFDPTATSW PHYQRSVYNA RGREWFLEGE VKF
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