| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1714 |
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| Symbol | panF |
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| ID | 5611903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2055213 |
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| End bp | 2056664 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932584 |
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| Product | sodium/panthothenate symporter |
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| Protein accession | YP_001473453 |
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| Protein GI | 157374853 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4145] Na+/panthothenate symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02119] sodium/pantothenate symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000601067 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGATTAATC TATTGCCGGT ATTTATCTAC CTTATCTTGA GCCTCATCGT CACTCGTTGG
TGGAGCGCTG CAGGTGCTAA AGCCTCTGGC TCGCTATATC AGGACAGAGC GAAACGATTT
TTTATCGGAG GCCAGTTTCT CAATGGCCCC ATGTTGGCGC TAACCTTAGT CGCCACTTAT
ACCAGTGCCA GCTCATTTAT CGGAGGTCCG GGAGCCGCCT ATAAGATGGG GTTAGGCTGG
GTATGGTTAG CCCTTATTCA GGTTCCGGTG GCGATACTGA CCTTAGGCGT GCTTGGCCCC
AAGTTTTTAA GCCAGCGAAA AAAGCAGCAT TCGACGTTAA TTGAATGGCT CGATGACCGT
TATCAGAATC GCTGGTTAAG TTGGCTGGCC ATAACTAGCC TGGTTGTAGG CTTCGTGGCA
ATGATCTCGG TGCAGTTTAT CGGCGGAGCC AGAATGTTCT CCGGGGTCAG TGGTATTAGT
TATGAGCTAG GATTGGGATT ATTTGTTATC ACCGTACTGG CTTATACCTT GACGGGAGGT
TTCAGGGCTG TGGTCATCAC AGATGCACTT CAGGGTATGG TCATGTTGCT TGGTTTAATC
GTGTTGTTGG CGGTTGTATT AAGTCAGGGC TCTTTACCTG AGTTGATGGG TGAGGTCAGT
AAACAGTCCC CTGAGATGCT GAGCCCTCAC GGTGTAAATG AGTATCTGGG TTGGCCCATG
ATGTTGTCAT TTTGGATACT TATCTGTTTC GGTACCATGG GCTTACCCCA TACATTGGTG
CGTTTGTTGG CGGTAAAGGA TAAGGCTTCA CTCAAGAGAG GCATGGTGTG GGGGACGATA
ATCTGTTTTC TGATGACGTT TATTCCTCAT GTGTGTGGCG TATTGGGTAG GGCGCTTTAT
CCCGATTTAG CCGTGTCCGA TGAGATCATG CCAACATTGA TTTCGGGCTT AATGAATCCG
TTCTGGGCAA GTCTGCTACT GGCCGCTCCC ATCGCTGCAG TTATGTCTTC TGTCGACTCT
ATGTTACTCC AGTCCGCAGT GAGTATAGTG AGGGATGGAG CTGTCAGGAT AAGTCCAGAA
ATAAGGCCCG CTAAACAAGT TCAGCTCACG CGCGTCGCTA TGTTGATTAT CACGGCCATT
GCCACCTACT GGGCAATCGA GCCGCCACAG ATGATAGTCT GGATTAATCT GGCTGCATTC
GGCGCGTTGC AGGCGGTTTT TCTCTGGCCA ATTATTGCCG GCGTTTTTTT CAAAGAGTTA
AAAGGTCATA GCGCACTCTT GTCTATGGTT TCGGGTTTAA TCAGTTACTT AGCTTTGCAG
TTTAATCCTC AGTCTATGTG GGGGGTTCAT CCTATTGTCC CGGCTCTGTC ACTATCCCTT
GCAGTCATGT TGCTGTCACA CTTTTCAACA ATGATGATTC GCCGTAAGCT AAGTGCTGAA
ACTGTAAGCT AG
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| Protein sequence | MINLLPVFIY LILSLIVTRW WSAAGAKASG SLYQDRAKRF FIGGQFLNGP MLALTLVATY
TSASSFIGGP GAAYKMGLGW VWLALIQVPV AILTLGVLGP KFLSQRKKQH STLIEWLDDR
YQNRWLSWLA ITSLVVGFVA MISVQFIGGA RMFSGVSGIS YELGLGLFVI TVLAYTLTGG
FRAVVITDAL QGMVMLLGLI VLLAVVLSQG SLPELMGEVS KQSPEMLSPH GVNEYLGWPM
MLSFWILICF GTMGLPHTLV RLLAVKDKAS LKRGMVWGTI ICFLMTFIPH VCGVLGRALY
PDLAVSDEIM PTLISGLMNP FWASLLLAAP IAAVMSSVDS MLLQSAVSIV RDGAVRISPE
IRPAKQVQLT RVAMLIITAI ATYWAIEPPQ MIVWINLAAF GALQAVFLWP IIAGVFFKEL
KGHSALLSMV SGLISYLALQ FNPQSMWGVH PIVPALSLSL AVMLLSHFST MMIRRKLSAE
TVS
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