| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1705 |
|---|
| Symbol | |
|---|
| ID | 5610339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2043928 |
|---|
| End bp | 2045127 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640932575 |
|---|
| Product | acetate kinase |
|---|
| Protein accession | YP_001473444 |
|---|
| Protein GI | 157374844 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0282] Acetate kinase |
|---|
| TIGRFAM ID | [TIGR00016] acetate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0458561 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00694718 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAACA AACTGGTATT GGTACTTAAC TGCGGTAGCT CGTCATTAAA ATTTGCGATT
ATCGACGCCC TTACAGGTGA TGACCAGATC TCGGGTCTCG CCGAATGCTT CGGTCTTGAA
GACTCTCGTA TCAAATGGAA AGTCGATGGC AAGAAACAGG AAGCGAGCTT AGGTGCATTC
ACCGCTCACC GTGAAGCTGT CGAATATATC GTTAACAATA TTTTGGGTGA TCACCCACAA
ATTGCTGAGC AAATCCATGC TATCGGACAT CGAATTGTCC ACGGTGGAGA GAAGTTCACT
CAGTCTGTAA TCATCGATGA ATCAGTTGTT CAAGGCATCG AAGATTGTGC AGCCTTGGCG
CCACTTCATA ACCCAGCTCA CCTTATCGGT ATTCGTGCAT CTCAAGCTTC TTTCCCTGAG
CTTCCACAGG TCGCCGTGTT TGATACTGCG TTCCATCAAA CCATGCCGGA AAAAGCCTTT
ATCTATGCTC TTCCTTACAA ACTTTACCGT GAAAATGCTA TTCGTCGTTA TGGCATGCAC
GGTACGAGTC ACTTGTTCGT TAGCCGTGAA GCGGCTAAAG CTATCGGTAA GGATATCGCA
GACACTAATA TTATCTGCGC TCACTTAGGC AACGGTGCTT CGGTTACTGC GATCAAAGGC
GGAAAGAGTG TCGATACCTC TATGGGTATG ACACCACTGG AAGGTTTGGT TATGGGTACA
CGTTGTGGTG ATATCGACCC ATCGATCATT CATCATTTGG TCAGCCGTCT GGGTTACACC
TTAGATGAAG TTAATAACCT GATGAACAAA CAAAGTGGTC TATTAGGTAT TTCAGAACTG
ACCAACGATT GTCGTGGCAT CGAAGAGGGT TATCAGAATG GCCATAAGGG TGCAACATTA
GCACTGGAGA TCTTCTGCTA CCGTCTGGCT AAATACATCG CTTCTTATAC TGTGCCATTA
GGTAAGTTAG ATGCCCTGGT ATTCACCGGC GGCATTGGTG AGAACTCAGA TCTAATTCGA
GCTAAGGTGC TTAACCTACT TGAAATCTTT AACTTTGAAG TTGATGACGA GCGTAACAAG
GCGGCACGTT TTGGTAAGCA AGGTCAAATT ACCACAGACA ATGGCCCAAT TGCTCTGGTT
ATCCCAACCA ACGAAGAGTG GGTTATCGCA GAAGACGCGA TGAGCCTTCT AAGCAAGTAA
|
|---|
| Protein sequence | MSNKLVLVLN CGSSSLKFAI IDALTGDDQI SGLAECFGLE DSRIKWKVDG KKQEASLGAF
TAHREAVEYI VNNILGDHPQ IAEQIHAIGH RIVHGGEKFT QSVIIDESVV QGIEDCAALA
PLHNPAHLIG IRASQASFPE LPQVAVFDTA FHQTMPEKAF IYALPYKLYR ENAIRRYGMH
GTSHLFVSRE AAKAIGKDIA DTNIICAHLG NGASVTAIKG GKSVDTSMGM TPLEGLVMGT
RCGDIDPSII HHLVSRLGYT LDEVNNLMNK QSGLLGISEL TNDCRGIEEG YQNGHKGATL
ALEIFCYRLA KYIASYTVPL GKLDALVFTG GIGENSDLIR AKVLNLLEIF NFEVDDERNK
AARFGKQGQI TTDNGPIALV IPTNEEWVIA EDAMSLLSK
|
|---|
| |