Gene Ssed_1694 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1694 
Symbol 
ID5609631 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2030438 
End bp2031469 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content46% 
IMG OID640932564 
Productputative periplasmic protease 
Protein accessionYP_001473433 
Protein GI157374833 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0077753 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.738833 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAATTTT TGTACGAATA TGGATTGTTT TTCGCTAAGG CGATCACTGT TGTCTTGTCG 
ATTATTGCCG TTGTGATTGT TGTGTTGGCG TCAGCCGTTA AACAAAAGAG CGAAAAGGGC
GAGCTTAGAA TGACGAATGT CTCTGAGGAG CTCAAGACAC TCAAGCACGA TCTTAAAGAG
GAGTTGCTGA GTAAAAAGCA ATTTAAAGCC TATGAGAAGC AACTCAAGGC TGAAGAGAAA
GCGAAAGAGA AGGCACAAAA GAATCAAAAA GAGGAGGTGA TCGAGCCTCG CGTGTTTGTT
GTCGATTTTA AAGGCAGCAT CGATGCCAGT GAAGTTGCAT CGCTGCGAGA AGAGATCAGC
GCTATTATCG CCATTGCAGA GTCTGGTGAT GAAGTCATCG TCAATGTAGA GAGTGGCGGT
GGCATGGTTC ACGGTTATGG CTTAGCGTCG AGTCAGCTCG ATCGTCTTCG CCAAGCTAAA
CTGCCATTGA CTATCTGTGT CGATAAGGTC GCAGCCAGTG GCGGTTATAT GATGGCGTGT
GTGGCGAATA AAATCTATGC GGCCCCATTT GCCATTGTGG GCTCTATCGG GGTCGTTGCT
CAGGTACCTA ACTTTAATCG TCTGATGAAA AAGCATGATA TCGATTATGA GCAGCATACC
GCCGGTGACT TTAAGCGTAC ATTAACCCTT TTTGGTGAGA ATACGGACGA AGGTCGTGCC
AAGTTCCAGG AGGAGCTTGA GGAGACTCAC AAGTTATTTA AATCTTTTAT TGCTCAATAC
CGCCCTGAGC TCGATCTGGG TAAGGTCGCC ACCGGCGAAC ATTGGTATGG TCAGCAGGCG
ATAGACCTAG GCCTTATTGA TGAGATTGCA ACGAGTGATG ATGTGGTGAT GAAGCTGGCA
TTAGAGCGAA CCGTGATTAA AGTCCGCTAC CAATTGAAGA AAAATTTTGC CGATAAGATC
GCCCATGGTG CATCGTTATC ATTCAATGCC ATCTTCAACA AAATGGCAGA GAAAAATCAG
TCATTGAATT GA
 
Protein sequence
MEFLYEYGLF FAKAITVVLS IIAVVIVVLA SAVKQKSEKG ELRMTNVSEE LKTLKHDLKE 
ELLSKKQFKA YEKQLKAEEK AKEKAQKNQK EEVIEPRVFV VDFKGSIDAS EVASLREEIS
AIIAIAESGD EVIVNVESGG GMVHGYGLAS SQLDRLRQAK LPLTICVDKV AASGGYMMAC
VANKIYAAPF AIVGSIGVVA QVPNFNRLMK KHDIDYEQHT AGDFKRTLTL FGENTDEGRA
KFQEELEETH KLFKSFIAQY RPELDLGKVA TGEHWYGQQA IDLGLIDEIA TSDDVVMKLA
LERTVIKVRY QLKKNFADKI AHGASLSFNA IFNKMAEKNQ SLN