| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1694 |
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| Symbol | |
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| ID | 5609631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2030438 |
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| End bp | 2031469 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932564 |
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| Product | putative periplasmic protease |
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| Protein accession | YP_001473433 |
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| Protein GI | 157374833 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0077753 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.738833 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGAATTTT TGTACGAATA TGGATTGTTT TTCGCTAAGG CGATCACTGT TGTCTTGTCG
ATTATTGCCG TTGTGATTGT TGTGTTGGCG TCAGCCGTTA AACAAAAGAG CGAAAAGGGC
GAGCTTAGAA TGACGAATGT CTCTGAGGAG CTCAAGACAC TCAAGCACGA TCTTAAAGAG
GAGTTGCTGA GTAAAAAGCA ATTTAAAGCC TATGAGAAGC AACTCAAGGC TGAAGAGAAA
GCGAAAGAGA AGGCACAAAA GAATCAAAAA GAGGAGGTGA TCGAGCCTCG CGTGTTTGTT
GTCGATTTTA AAGGCAGCAT CGATGCCAGT GAAGTTGCAT CGCTGCGAGA AGAGATCAGC
GCTATTATCG CCATTGCAGA GTCTGGTGAT GAAGTCATCG TCAATGTAGA GAGTGGCGGT
GGCATGGTTC ACGGTTATGG CTTAGCGTCG AGTCAGCTCG ATCGTCTTCG CCAAGCTAAA
CTGCCATTGA CTATCTGTGT CGATAAGGTC GCAGCCAGTG GCGGTTATAT GATGGCGTGT
GTGGCGAATA AAATCTATGC GGCCCCATTT GCCATTGTGG GCTCTATCGG GGTCGTTGCT
CAGGTACCTA ACTTTAATCG TCTGATGAAA AAGCATGATA TCGATTATGA GCAGCATACC
GCCGGTGACT TTAAGCGTAC ATTAACCCTT TTTGGTGAGA ATACGGACGA AGGTCGTGCC
AAGTTCCAGG AGGAGCTTGA GGAGACTCAC AAGTTATTTA AATCTTTTAT TGCTCAATAC
CGCCCTGAGC TCGATCTGGG TAAGGTCGCC ACCGGCGAAC ATTGGTATGG TCAGCAGGCG
ATAGACCTAG GCCTTATTGA TGAGATTGCA ACGAGTGATG ATGTGGTGAT GAAGCTGGCA
TTAGAGCGAA CCGTGATTAA AGTCCGCTAC CAATTGAAGA AAAATTTTGC CGATAAGATC
GCCCATGGTG CATCGTTATC ATTCAATGCC ATCTTCAACA AAATGGCAGA GAAAAATCAG
TCATTGAATT GA
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| Protein sequence | MEFLYEYGLF FAKAITVVLS IIAVVIVVLA SAVKQKSEKG ELRMTNVSEE LKTLKHDLKE
ELLSKKQFKA YEKQLKAEEK AKEKAQKNQK EEVIEPRVFV VDFKGSIDAS EVASLREEIS
AIIAIAESGD EVIVNVESGG GMVHGYGLAS SQLDRLRQAK LPLTICVDKV AASGGYMMAC
VANKIYAAPF AIVGSIGVVA QVPNFNRLMK KHDIDYEQHT AGDFKRTLTL FGENTDEGRA
KFQEELEETH KLFKSFIAQY RPELDLGKVA TGEHWYGQQA IDLGLIDEIA TSDDVVMKLA
LERTVIKVRY QLKKNFADKI AHGASLSFNA IFNKMAEKNQ SLN
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