| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1661 |
|---|
| Symbol | |
|---|
| ID | 5610417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1989276 |
|---|
| End bp | 1990565 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640932531 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_001473400 |
|---|
| Protein GI | 157374800 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.485679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCTG ACCTCACCCT AGCAGGCTTA ACCGCCATAA AGCACACATT TACGCTACCC
CTTGACTACG CCAAACCTGA TGGAAAGCAG ATCCAGGTAT TCGCCAGAGA GCTTTCCAGC
CCTGAAAACT CAAGCAAAGC CCTCCCTTTC ATCGTCTTCT TTCAGGGGGG ACCCGGCTTT
GGTGCGATTC GCCCTGCCGC AAACGGTGGC TGGATAAAGC GCGCCCTGAA AGAGTATAGA
GTGCTGCTTT TAGATCAGCG AGGTACCGGG CTTTCAACCC CGGTAAACCA TATCAGCCTG
GCCCATTTGA ATTCGGAGCA GCAGGCCGAA TATTTAACGC ATTTCAGGGC CGACAATATC
ATTCGTGACG CCGAAGCGAT TCGAGAAAAA CTCTGTCCGG GCGAGAAGTG GAGCATCTTA
GGTCAGAGTT TCGGCGGTTT CTGTGTACTG AAATACCTGA ATGATGCTCC ATCGGGCCTG
AGTGAGGCCT ACATTACAGG CGGGCTACCC TCGCTGACAC GCCATGCAGA CGATGTCTAC
CGGGCGACGT ACAAGCGGGT ATTAGCCAAG AACGAAGATT TTTTCACACG CTTTAGCGAT
ACCCAGCACT TGGTGAGCCG ACTGGCGAAG CATATCAGCC AAAATGAGGT AAGAATTGCC
ACCGGCGAGC GACTCACGGT CGAGATGCTA CAGTTGCTGG GGATCAATAT CGGCATGGAG
CAGGGGCCCG AATCTGTCTA TTACCTGCTC GAGCAAGCCC TGATTGAGAC CGAAGCCGGT
ACTCGGGTCA ACCCACTGTT TTTGGCCCAT TTTTGTCAAC TGCTGGACTT TAACACTAAC
CCTATTTTTG CCCTGCTTCA CGAGAGTATC TACTGCCAGC AGTCGGCATC GAATTGGTCG
GCTCAGCGCG TTCGAGCCCA GTATGATGAG TTTAACTACG AAGATGGTAA ACAATTCCTG
TTTACCGGAG AGATGGTCTA CCCCTGGTTT TTCGAACAGT TCACTAACCT TAAACCACTC
AAGCATGCCG CTAATCTTTT AGCCACCAAA GAGGATTGGT CCGGACTCTA TGATCTCGAT
ACTTTAGCCA ACAACTCTGT GCCCGTTGCC GCCGCTATCT ATAGCGAAGA TATGTTCGTC
GAGATGAACT ACTCTCTGGA AACGACTAAG CAGGTGGGTA AGCTGAAATA CTGGCTCACC
TCAGAGTACG AGCATAACGG CATCCGTATG GATGGCGAGC ATATTCTCGA CAGGCTTATC
GCCCTCAACC GGGGAGAGAA GTTGCGATAA
|
|---|
| Protein sequence | MKPDLTLAGL TAIKHTFTLP LDYAKPDGKQ IQVFARELSS PENSSKALPF IVFFQGGPGF
GAIRPAANGG WIKRALKEYR VLLLDQRGTG LSTPVNHISL AHLNSEQQAE YLTHFRADNI
IRDAEAIREK LCPGEKWSIL GQSFGGFCVL KYLNDAPSGL SEAYITGGLP SLTRHADDVY
RATYKRVLAK NEDFFTRFSD TQHLVSRLAK HISQNEVRIA TGERLTVEML QLLGINIGME
QGPESVYYLL EQALIETEAG TRVNPLFLAH FCQLLDFNTN PIFALLHESI YCQQSASNWS
AQRVRAQYDE FNYEDGKQFL FTGEMVYPWF FEQFTNLKPL KHAANLLATK EDWSGLYDLD
TLANNSVPVA AAIYSEDMFV EMNYSLETTK QVGKLKYWLT SEYEHNGIRM DGEHILDRLI
ALNRGEKLR
|
|---|
| |