| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1650 |
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| Symbol | |
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| ID | 5611319 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1974562 |
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| End bp | 1975578 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932520 |
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| Product | aspartate-semialdehyde dehydrogenase |
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| Protein accession | YP_001473389 |
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| Protein GI | 157374789 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0136] Aspartate-semialdehyde dehydrogenase |
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| TIGRFAM ID | [TIGR01296] aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00338188 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCACAAG AATTCAATGT TGTCGTTTTA GGTGCATCGG GCGCAGTCGG TCAGACAATG
ATCGAGATCC TCGAAGAGCG CAATTTCCCC GTTGCTAATT TATACCCTCT AGCCAGTAGC
CGTAGTGCTG GTGATACGGT CACCTTCCAC GGTAAACAGG TAGAAATTCT TGATGTTGAT
ACCTTTGACT GGTCTCAAGC ACAGATAGGT TTCTTCTCTG CTGGTGGTGA TGTTTCGGCT
AAATGGGCGC CGATAGCAGC CGAAAATGGC TGTGTGGTTA TCGATAATAC CTCTCACTTC
AGATATGACA TCGATATTCC GTTAGTGATA CCTGAAGTGA ATCCGGAGGC GATTGCAGAT
TTCCGTAACA GAAATATTAT CGCTAACCCT AACTGCTCGA CCATTCAGAT GTTGGTTGCC
TTGAAACCGA TTTACGATGC CTATGGGATC TCTCGAATTA ACGTCGCGAC CTATCAGTCG
GTATCGGGTT CGGGTAAGCA GGCGATCGAA GAGTTGGCCA GTCAGTGCGC CAAGTTACTT
CAAGGCCTTC CGGTAGAGCC AAAAGCTTAT CCAAAGCAGA TAGCGTTTAA CGCTTTACCG
CAGATCGATA AGTTTATGGA TAACGGATAT ACCAAAGAAG AGATGAAGAT GGTCTGGGAA
ACTCAGAAAA TCTTCGGTGA TGACAATATC GTCGTTAACC CGACTGCGGT ACGTGTTCCC
GTTTTCCACG GTCACTCTGA GGCGATTCAT CTGGAGACGC TACAGCCTGT CGATGCCGAA
GATGTTAAAT CAGTGTTACG CGGCGCAGAA GGGGTTGAGT TATTTGAATC CGACGAAGAG
TATCCTACGG TTGTGACCGA TGCCGCCGGA ACCGATCCCG TTTATGTGGG ACGTGTTCGT
AAAGATATTT CACATGATAA TGGCATTAAC CTATGGGTTG TCTCTGATAA CATTAGGAAA
GGTGCGGCAC TAAACAGCAT TCAGATTGCC GAAGTGCTAA TCCGTGATTA TTATTGA
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| Protein sequence | MSQEFNVVVL GASGAVGQTM IEILEERNFP VANLYPLASS RSAGDTVTFH GKQVEILDVD
TFDWSQAQIG FFSAGGDVSA KWAPIAAENG CVVIDNTSHF RYDIDIPLVI PEVNPEAIAD
FRNRNIIANP NCSTIQMLVA LKPIYDAYGI SRINVATYQS VSGSGKQAIE ELASQCAKLL
QGLPVEPKAY PKQIAFNALP QIDKFMDNGY TKEEMKMVWE TQKIFGDDNI VVNPTAVRVP
VFHGHSEAIH LETLQPVDAE DVKSVLRGAE GVELFESDEE YPTVVTDAAG TDPVYVGRVR
KDISHDNGIN LWVVSDNIRK GAALNSIQIA EVLIRDYY
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