| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1644 |
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| Symbol | |
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| ID | 5611049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1965031 |
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| End bp | 1966242 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932514 |
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| Product | beta-ketoacyl synthase |
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| Protein accession | YP_001473383 |
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| Protein GI | 157374783 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00348297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAG TCGTGATCAC CGGACTTGGC GTCGTTTCAA GTATTGGTAA CAACAAGCAA
GAAGTCACTG AGTCACTAAA AGCTGGCCGC AGTGGTATCA CTCATTCAGA TCAGTTTGAG
GAAATGAAGC TTCGCAGCCA CGTCTGGGGC GACATCAAAC TGGATCCTAA AGAACATATT
GACCGTAAAG CATTGCGCTT TATGGGTAAC GCGGCGGCAT ATGCCTATAT CGCCATGGCT
GAAGCCATCG AAGATGCCGG GCTAACCGAA GAGCAGTACT CCGACCCTCG AGTCGGTATT
ATTGCCGGTA CTGGTGGCGC TTCATCTGCC AACCAGGTAC AAGCTGCCGA TACGCTACGT
GAAAAGGGCG TTAAGCGTGT AGGTCCTTAT ATCGTACCTC GCATCATGTC GAGTACCTCG
AGTGCTTGCT TGGCCACACC GTTTAAAATC AAGGGTATGA ACTATTCAAT AAGTTCAGCC
TGTGCAACCA GTGCACACTG TATCGGCCAT GCGGCCGAGC TTATCCAGAT GGGTAAGCAA
GATATGGTCT TTGCCGGTGG TTCTGAAGAG GTCGATTGGA CCCTGACTAT GGGTTTCGAC
GCCATGGGCG CGTTGTCGAC TAAGTACAAT GACACACCTG AAAAGGCGTC ACGTACTTAC
GATGCTGACC GTGATGGTTT TGTTATCTCT GGTGGCGGCG GAATCGTTGT CGTCGAAGAG
CTTGAGCATG CCTTAGCACG TGGTGCTAAA ATTTATGCCG AAATCATTGG TTATGGCGCA
TCATCAGATG GCTATGACAT GGTAGCACCA TCGGGTGAAG GTGCGGTGCG TTGTATGCAG
ATGGCTCTTG CCGATGTCGA TACGCCTATC GATTACATCA ACACTCATGG TACATCGACG
CCAGTTGGTG ATATGCGTGA GCTTGAAGCG TTGCGTGAAA CTTTCGGTGA AAACTTGCCG
GCTATCGCAT CGACTAAGTC TCTGACCGGT CACGCACTGG GTGCTGCAGG CGCTCATGAG
GCTATCTACA GCTTGATCAT GATGGAGGAT AGCTTCATCG CACCGAGTAT CAACATCGAT
AACCTGGATG AGAAAGCTGC CGGTATGCCG GTTGTGACTG AATACCGCGA AGCCGAGCTA
AATACTGTGA TGAGTAACAG TTTTGGTTTC GGTGGCACCA ATGCCACTTT GGTTATGCGT
AAGTATAAAT AA
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| Protein sequence | MKRVVITGLG VVSSIGNNKQ EVTESLKAGR SGITHSDQFE EMKLRSHVWG DIKLDPKEHI
DRKALRFMGN AAAYAYIAMA EAIEDAGLTE EQYSDPRVGI IAGTGGASSA NQVQAADTLR
EKGVKRVGPY IVPRIMSSTS SACLATPFKI KGMNYSISSA CATSAHCIGH AAELIQMGKQ
DMVFAGGSEE VDWTLTMGFD AMGALSTKYN DTPEKASRTY DADRDGFVIS GGGGIVVVEE
LEHALARGAK IYAEIIGYGA SSDGYDMVAP SGEGAVRCMQ MALADVDTPI DYINTHGTST
PVGDMRELEA LRETFGENLP AIASTKSLTG HALGAAGAHE AIYSLIMMED SFIAPSINID
NLDEKAAGMP VVTEYREAEL NTVMSNSFGF GGTNATLVMR KYK
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