| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1643 |
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| Symbol | |
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| ID | 5611048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1962782 |
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| End bp | 1964920 |
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| Gene Length | 2139 bp |
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| Protein Length | 712 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932513 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_001473382 |
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| Protein GI | 157374782 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0028636 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAATA TGAGACATAG AGTAAATTCA TTGACTGAAG AACATGAAGA AAATATGCAA
ATGAGTAAGT TAACTGGTCA TTTATCCTCA ATTTCCACCC TTTTTCCCGT CAAAAACGAT
GCCAGCCAGA CTCTCACTTT AGGTCAATTG GGCTTAGGTT GCCCGTGCCA GCTAGTCTCA
TTATGGCATT ATTTACGAAA AAACAGCCCT TCGAGAGCCG TAAACATAAA AATTTTCGAA
TCACAATTCG ATGCTCTGGC CGATTTCAAT CTAAAACTTG CTTCACTCAC CTCCCCTGAC
CCAAGACTCC CCCGTGACGA TGAGCAATCG ACCATGGTAG AGGCACTACT TCGAGCGGAT
ATTGTTGCTA TCGAAGGCTG CCAGCGACTT ATCTTCGATG ATGGCCGCGT CATACTCGAT
ATCTATTTAG GTGACACGCT GAGTCAACTT AAGTGCATTT TACCGACTTC AGTCAAAGGG
GATATGACGG ACAATTCGGC GCTTATCGCC CACTGGAACA TCACAGAAAA GGTTAAAGCC
GGCTCACTCG ACCAAGCGAT GCTCTGGCAG ATAGCCAAAT TAAGCCGCGA TAATGCAGCA
CTATCCTTTA CCGATCCCGA AAGCAAAGAG ACCCGGCAGA TGATGGCTTT GGCACGAAGC
GTCGGTCTGC GGACCTTAGA AACCACAGTA TCTGAAACCA CAGTACCTGA GACTCAGCAA
CAAACAGAAA ATAAGAACCT CGATACGGCA AGTGATGCTA TCCCACTACA GGAACGGCGT
GCGTTAAGGC ACGCCCAATC AGACAAGTTT CAGTACTGCC CTGTTTCTGC GGCCAATGAA
GGTGATGAGG ATTGTGACGG TGAGATCGCG ATTATCGGCG GCGGTGTTGC CAGCACACAT
CTGGCGCTCT CGCTTGCTCA GCGCAATAAA AAGGTACGCA TTTTTTGTAG TGATGCCAAT
TTTGCGCAGC AGGCGTCCGG TAATAAACAG GGCGCCGTCT ACCCCCTTCT CACGCCAGAC
AACGGTCATT TGAGTCACTA CTTTCAACAG GGGTACCTAT TTACTCGCCG CCGTCTGCAA
GCGCTGGTCG ATGACAAGTT TGCTGTCTCC TATGATTTTT GCGGCGTACT GCAAACGGGT
TTCGATGACC GCAGCAGCGC ACGACTGGAT AAGATCATTA ATGGTCAGAG CTGGAATGAG
AAGATGGCTT ACCCCATAGA TGCAGCCTCG GCCACTCAAA TAGCGGGGAT AGATATCGAT
AAAGCCGGAA TCTATTACCC GCTAGGCGGC TGGATATGTC CTCACGAATT TACCCGTGCT
GCGTTCGATA AGGCGGCTCG GCTCAGCGAT GTCAGCGTAG AGTTTAATGC CGACATTACA
CGCATAGAGC AAAGAGAGGG GCTCTGGTAT CTGTACAAGA GTGTGAACGT TCAACACTCT
TGTACAGATA GTCATACGCC AGATGATTCA GAAGAGCTTG AAATCGGCCC CTTCGCCAAT
CTGGTATTAG CCAATGGTCA GGGACTGACT CAGTTTAAGC AGAGCGAAAA GCTCCCCGCC
ACAGGGTTTC GTGGACAGGT CAGCCATATT CCATCTCGAA ATGCGTTAAC CAAACTGAGC
ACTGTGCTTT GCTCCCACGG TTACCTGACT CCGGGGAATA ATAACTTTCA CTGTACCGGT
GCCAGTTATG TGAAAAACCC GACAAACCTC GATTACTGCG CAACAGAGCA GGTAGAAAAC
CTACATAAAA TCAGACATAG CTATGTCGAT AAACCCTGGA CTGAAGATGT AGATATTACC
GGGCACAGTG CACGGGTCGG CGTTCGTATG GTGACCCGGG ATCATGCACC TATGATGGGG
TGTGCTCCCG ATACCGACTC GATGCTGGCT CAATATGAAC AGCACCAGCA TACCAAGGAG
AGCATTAAAT TCTGGAAAGA GACCCCCGCT CCGACTCATA AGGGGTTATT TATTCTCGGC
GGGCTGGGCT CGAGGGGTCT CACCTCTGGC CCGTTAGCGG CAGAGGCGTT AGCTGCACAG
CTGTGTGGAG AGGTAATTCC TCTTAGCATG CCTATGCTTG AAATGCTCAA TCCCAACCGT
TTTTGGATGA GAAAACTCAT CAAAGGCAAA GCGCTCTAA
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| Protein sequence | MPNMRHRVNS LTEEHEENMQ MSKLTGHLSS ISTLFPVKND ASQTLTLGQL GLGCPCQLVS
LWHYLRKNSP SRAVNIKIFE SQFDALADFN LKLASLTSPD PRLPRDDEQS TMVEALLRAD
IVAIEGCQRL IFDDGRVILD IYLGDTLSQL KCILPTSVKG DMTDNSALIA HWNITEKVKA
GSLDQAMLWQ IAKLSRDNAA LSFTDPESKE TRQMMALARS VGLRTLETTV SETTVPETQQ
QTENKNLDTA SDAIPLQERR ALRHAQSDKF QYCPVSAANE GDEDCDGEIA IIGGGVASTH
LALSLAQRNK KVRIFCSDAN FAQQASGNKQ GAVYPLLTPD NGHLSHYFQQ GYLFTRRRLQ
ALVDDKFAVS YDFCGVLQTG FDDRSSARLD KIINGQSWNE KMAYPIDAAS ATQIAGIDID
KAGIYYPLGG WICPHEFTRA AFDKAARLSD VSVEFNADIT RIEQREGLWY LYKSVNVQHS
CTDSHTPDDS EELEIGPFAN LVLANGQGLT QFKQSEKLPA TGFRGQVSHI PSRNALTKLS
TVLCSHGYLT PGNNNFHCTG ASYVKNPTNL DYCATEQVEN LHKIRHSYVD KPWTEDVDIT
GHSARVGVRM VTRDHAPMMG CAPDTDSMLA QYEQHQHTKE SIKFWKETPA PTHKGLFILG
GLGSRGLTSG PLAAEALAAQ LCGEVIPLSM PMLEMLNPNR FWMRKLIKGK AL
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