| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1629 |
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| Symbol | fadJ |
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| ID | 5611391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1944090 |
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| End bp | 1946237 |
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| Gene Length | 2148 bp |
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| Protein Length | 715 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932499 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_001473368 |
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| Protein GI | 157374768 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02440] fatty oxidation complex, alpha subunit FadJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.895951 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0132209 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAGA CCTTTAATTT AGCGCGTCGT GAAGATGGTA TTGCCATACT GACAATGGAT
GTGCCCGGCG AAACAATGAA CACCTTGCGT GCCGAGTTTG GCCCTGAAAT TAACCAAGTA
TTAGCAGAGA TAAAAGCCGA CAGCAGTATC AAAGGGCTGG TACTTATCTC CGGAAAGAAA
GACTCTTTCG TTGCCGGCGC CGATATCTCT ATGCTGGATG CCTGTAAAAC GGCCGCCGAT
GCTAAGCAGT TATCTCAGCA GGGACACGTT GTCTTTAATG AGCTGGAATC GTTAAAAATT
CCGGTCATTG CCGCTATTAA TGGCGCGTGT CTAGGTGGTG GACTCGAATT GGCATTAGCC
TGTCATCAAC GAGTATGTAG CTTAAACAGT AAGACCATGA TGGGCGTGCC TGAGGTACAA
CTCGGCCTGT TACCCGGTGG TGGAGGAACG CAGAGATTAC CACGATTAGT CGGGATCACC
ACCGCTCTGG ATATGATGTT GACGGGTAAG CAACTTCGTC CCAAGCAAGC GCTTAAAATG
GGATTAGTTG ACGATGTGGT TCCCGAGTCT ATTTTGCTTG AGACCGCGGT AGAGATGGCA
CTTAAGGGGA AGCGTGCCCC TAAAAAAGTG AAAAAGTCAT TAGTGACCCG CCTGCTTGAG
GGAACTCCGC CCGGCCGCAA CATTATCTTC GACCAAGCCG GTAAGCAAGT TGAGAAGAAA
ACTCACGGTA ACTATCCGGC CCCGGCAAAA ATTATTGATT GTGTACGTCA AGGCATGGCC
AAAGGGCTAA CCAAAGGGTT GGAGGTTGAG GCTAACCACT TTGCCGATCT GGTCGTCTCT
AAAGAATCTG AAGCGCTGCG AAGCATCTTC TTTGGTACCA CTGAGATGAA GAAAGAGACT
GGCGCCGGTG ATGTTGAACC ACGGAAAGTT CATAAGGCTA TGGTGTTAGG TGGCGGGCTT
ATGGGAGGAG GTATCGCGTC TGTGACGACG ACCAAAGCTA AAATACCCGC TCGAGTAAAG
GATATTAGTG AGCAGGGGCT GAGTAACGCG CTTTCTTATG CTTATAAGCT ATTAGATAAG
GGCGTTAAGC GTCGTCATAT GACACCGGCA GTAAGAGATA ACTTAATGTC TCTGATGACG
ACAACGACAG AATATAAAGG CATTAAAGAT GCCGATATCG TCGTTGAAGC CGTGTTTGAA
GATCTGAAAT TAAAGCATCA GATGGTTAAA GATGTTGAAC GTGAATGTGG TGAGAATACC
ATTTTTGCCT CTAACACCTC CTCACTGCCT ATTTCGCAGA TAGCCGAGGC CGCCAGCCGT
CCTGAAAATG TTATTGGCTT ACACTACTTT TCTCCGGTCG AGAAGATGCC TTTGGTTGAG
GTTATCGCCC ATGAGAAGAC CTCTGCCGAA ACGATAGCCA CAACCGTCGC CTTCGCCCGT
AAGCAGGGGA AGACGCCTAT CGTGGTTCAA GATGGGGCTG GTTTCTATGT CAACCGTATC
TTGGCCCTGT ATATGAATGA AGCCGCTCAA CTGCTGCTGG AAGGGCAGAG TGTTGAACAC
TTAGATAAGG CGCTGGTTAA ATTTGGTTTC CCTGTCGGAC CTATGACGCT ACTCGACGAA
GTTGGAATCG ATGTCGGGGC TAAAATTTCT CCTATCTTAG AGTCAGAGCT TGGCGAACGC
TTTAAGGCTC CTGCAGCCTT CGATAAGCTG CTTGCAGACG ATCGAAAAGG TCGTAAGAAT
GGTAAAGGTT TTTATCTTTA TGGCAGCAAG GCTAAACAGA GATTTAAGAA GAAAGCGAAG
CTGGTCGATG AGTCAGTCTA TGCAGTGCTT GGTTTAACGC CTACATCAAC GGATAGTAAT
AACGACTCTC AGGATGTTGC TCAGCGTTGT GTCGTGCAGA TGCTTAATGA AGCCGTTCGT
TGTCTGGAAG AGGGGATTAT CGCCTCACCA CGTGATGGTG ATATTGGTGC CATCTTCGGA
ATCGGTTTCC CGCCGTTTCT TGGAGGCCCG TTCCATTATA TCGATTCAAT GGGAGCCGCT
GAGCTGGTGG CAGTATTGGA AACTTATCAG GCCAAATTTG GAGATAGGTT TACACCTTGC
GATCGTTTAA AAGAGATGGC TGAAAATGGA CTGTCCTTTT TTGAATAA
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| Protein sequence | MEKTFNLARR EDGIAILTMD VPGETMNTLR AEFGPEINQV LAEIKADSSI KGLVLISGKK
DSFVAGADIS MLDACKTAAD AKQLSQQGHV VFNELESLKI PVIAAINGAC LGGGLELALA
CHQRVCSLNS KTMMGVPEVQ LGLLPGGGGT QRLPRLVGIT TALDMMLTGK QLRPKQALKM
GLVDDVVPES ILLETAVEMA LKGKRAPKKV KKSLVTRLLE GTPPGRNIIF DQAGKQVEKK
THGNYPAPAK IIDCVRQGMA KGLTKGLEVE ANHFADLVVS KESEALRSIF FGTTEMKKET
GAGDVEPRKV HKAMVLGGGL MGGGIASVTT TKAKIPARVK DISEQGLSNA LSYAYKLLDK
GVKRRHMTPA VRDNLMSLMT TTTEYKGIKD ADIVVEAVFE DLKLKHQMVK DVERECGENT
IFASNTSSLP ISQIAEAASR PENVIGLHYF SPVEKMPLVE VIAHEKTSAE TIATTVAFAR
KQGKTPIVVQ DGAGFYVNRI LALYMNEAAQ LLLEGQSVEH LDKALVKFGF PVGPMTLLDE
VGIDVGAKIS PILESELGER FKAPAAFDKL LADDRKGRKN GKGFYLYGSK AKQRFKKKAK
LVDESVYAVL GLTPTSTDSN NDSQDVAQRC VVQMLNEAVR CLEEGIIASP RDGDIGAIFG
IGFPPFLGGP FHYIDSMGAA ELVAVLETYQ AKFGDRFTPC DRLKEMAENG LSFFE
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