| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1619 |
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| Symbol | |
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| ID | 5611560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1932317 |
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| End bp | 1933768 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932489 |
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| Product | sodium/proline symporter |
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| Protein accession | YP_001473358 |
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| Protein GI | 157374758 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000146301 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000122936 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGCATTG AATTACCAAT TTTAATTACT TTCATCGGCT ACCTCGCCCT AATGATGGGA
ATAGGACTCT GGGCCTATAA AGCAACCGAT TCTGTAGACG ACTACATCCT TGGTGGCAGA
GGCATGGGCC CGGCGGTGAC AGCCCTGAGT GTCGGCGCCT CAGACATGTC TGGTTGGTTA
TTGCTAGGAT TACCCGGTGC CGTTTACCTC GGTGGACTCG GTGAGGCTTG GATTGGAATA
GGCTTAGTGT TTGGCGCATG GTTAAACTGG CTCTTTGTCG CTAAGCGACT GCGAATTTAT
ACCGAATTCA CCGATAATGC CCTCACACTC CCTGACTTTT TCGAGAAGCG CTTCGAAGAT
AAAAAAGGCC TGTTAAAATT CGTATCGGCG GTGACTATCT TAGTCTTCTT CACCTTTTAT
GCCTCTTCAG GCATGGTTGG CGGCGCTATC TTGTTCGAGA AAGTATTCGG TTTAGATTAC
ACTCTCGCCT TAGTGATAGG CTCGACTATC ATTGTGGCTT ACACCTTCGT CGGTGGTTTC
TTTGCCGTAA GTTGGACAGA CTTTTTTCAA GGCTGTTTGA TGTTAGTCGC ACTACTTATC
GTGCCGGTGG CTATCTTTAG TCAGCCTGAG GCACAAAATG GCATCGACAC ATTAGATCCT
GCCATGCTCT CACTGTTCCA TGAAAACACG ACGGTAATAG GTCTGGTATC ACTGTTGGCC
TGGGGTCTTG GTTATTTCGG CCAGCCACAT ATTCTATCTC GTTTTATGGC TATTGGCAGT
GCTGAGGATA TCCCGGTATC TCGTCGTATC GCGATGAGTT GGATGGTCGT CGCGCTGATC
GGAGCCTTGG CAACGGGACT CGCCGGAACC CTCTATTTTG CTAATGATCC ATTGGCCAAT
CCTGAAACTG TATTTATTCA TCTGGCCCAT GCCGCTTTTA ACCCTTGGAT TGGTGGTCTG
CTTATTGCGG CTATTCTTTC GGCTATCATG AGCACCATCG ACTCACAGCT TCTGGTCTGC
TCCAGCGTTA TCACCGAAGA TTTTTATAAG AAATGGTTAC GACCCGAGGC GACAAGCAAA
GAGTTGATGC TAGTCGGCCG TATAGGCGTA TTAGCCATTG CTGTTATCGC AGGCATTGTT
GCCCTTAACC CTGAAAGTAG TGTACTTGGA CTTGTCAGCT ATGCCTGGGC CGGATTTGGT
GCCGCATTTG GTCCCGTAGT CTTATTATCC CTCTTCTGGA AAGCATATAG CCGTGACGGC
GCCGTCGCAA CGATTGTTGT TGGCGCATTA ACCGTTGTCA TTTGGAAGCA GTTATCCGGT
GGAATTTTCG ATCTGTATGA GATCTTACCT GGATTTGTAT TTGCGACACT TTCCGGCATT
ATTGTTAGTA AATTATCGAC ACCATCTGAA GCGGTCAGAG AACAGTTTAG AGTATTTACT
TCAAAACTAT AA
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| Protein sequence | MSIELPILIT FIGYLALMMG IGLWAYKATD SVDDYILGGR GMGPAVTALS VGASDMSGWL
LLGLPGAVYL GGLGEAWIGI GLVFGAWLNW LFVAKRLRIY TEFTDNALTL PDFFEKRFED
KKGLLKFVSA VTILVFFTFY ASSGMVGGAI LFEKVFGLDY TLALVIGSTI IVAYTFVGGF
FAVSWTDFFQ GCLMLVALLI VPVAIFSQPE AQNGIDTLDP AMLSLFHENT TVIGLVSLLA
WGLGYFGQPH ILSRFMAIGS AEDIPVSRRI AMSWMVVALI GALATGLAGT LYFANDPLAN
PETVFIHLAH AAFNPWIGGL LIAAILSAIM STIDSQLLVC SSVITEDFYK KWLRPEATSK
ELMLVGRIGV LAIAVIAGIV ALNPESSVLG LVSYAWAGFG AAFGPVVLLS LFWKAYSRDG
AVATIVVGAL TVVIWKQLSG GIFDLYEILP GFVFATLSGI IVSKLSTPSE AVREQFRVFT
SKL
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