| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1615 |
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| Symbol | |
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| ID | 5613739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1928108 |
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| End bp | 1929151 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932485 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001473354 |
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| Protein GI | 157374754 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000338384 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000142207 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCGTATTC GACAGACTAA ATTTCTTTTT CCAGCCCTTT TCCCTGCCCT TTTCATTAGC
CTCTCATTGA TGAGTGCTCA CCTTTATGCT GCTTCAATTG AAACCACCAC CCTGGTTGAG
ACCAAGAAAA CAAAATGGAT AGAACTGGAT TCAAAACTTG AAGCCGTGAA AGCCGCAACC
GTATCGGCGC AAACCTCCGG TCGCATAATA AAACTCAATT ACGATGTTAA TGATATTGTC
TCCGAGGGAG CCTCATTACT GGAGATCACC AGTAAAGAAC AGGGCGCAGA ACTGGCTGCC
GCCGAAGCCG ACTATGCCAA AGCGATAGCC CAAGATAATG AGGCGCAGCT GCAAAGGAAC
CGGTATGAAA CCCTGTTCCC TAAGGGAGCC ATATCACAAG GCACGATGGA TGAAGCTATT
GCCAATGCCA AGTCCACTCA AGAAGCAGTA AGAGGCTCAA AGGCCCGCAT CATCCAAGCC
ACTGAATCGC TAAAATATAC GGAAGTCAAT GCGCCATTTT CAGGAATCGT CACTAAGAGG
CATGTGGAGC AAGGCGAAAC AGTAAGTCCC GGGCAGCCGC TCTTCTCCGG TTTTTCCATG
TCACAGATGC GCGCCATCGC CCACGTGCCA CAGCGTTATA TAGACGCATT GAAACAACTA
CCGGAGTTTA AGGTTACCCT CAATGATGGT CGTCAATTTA CCTCCAACTC GCTCACCATT
TTCTCGTTTG CCGATCCCCA GAGCCACAGT TATAAGGTAA GAATAAACCT ACCCGAGAAT
GAGCCAAATT TGATGCCGGG AATGTGGGCA AAAGCCAAAT TCAGTGCAGG CACTCGCTCG
AGTATTCTTA TTCCGACTTC ATCCCTGCTG AAACAAAATG AGCTCAGTGC CGTCTACCTC
AAACAGGGGG ATGACTTTGT ACTCAATCAA GTCCGTTTAG GCAATTACCA GGATAAAGAG
GTCGAAGTCT TGGCGGGGTT GAGCCCCGGA GATGTGATCG CCAGCGACGC GTACCAGGCA
CTTCAAAACC GTCAGGCAAA GTAG
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| Protein sequence | MRIRQTKFLF PALFPALFIS LSLMSAHLYA ASIETTTLVE TKKTKWIELD SKLEAVKAAT
VSAQTSGRII KLNYDVNDIV SEGASLLEIT SKEQGAELAA AEADYAKAIA QDNEAQLQRN
RYETLFPKGA ISQGTMDEAI ANAKSTQEAV RGSKARIIQA TESLKYTEVN APFSGIVTKR
HVEQGETVSP GQPLFSGFSM SQMRAIAHVP QRYIDALKQL PEFKVTLNDG RQFTSNSLTI
FSFADPQSHS YKVRINLPEN EPNLMPGMWA KAKFSAGTRS SILIPTSSLL KQNELSAVYL
KQGDDFVLNQ VRLGNYQDKE VEVLAGLSPG DVIASDAYQA LQNRQAK
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