| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1611 |
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| Symbol | |
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| ID | 5611578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1920959 |
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| End bp | 1923367 |
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| Gene Length | 2409 bp |
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| Protein Length | 802 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932481 |
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| Product | peptidase S8/S53 subtilisin kexin sedolisin |
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| Protein accession | YP_001473350 |
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| Protein GI | 157374750 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4935] Regulatory P domain of the subtilisin-like proprotein convertases and other proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0326681 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTAA GACAATTTAC GACTTCAGCA TTGAGCCTGT CAGTTTTAGC TATCGCTATC
TCTGCCACTG TTCAAGCCGC TCCCACATTC ACTCAAGGTA TCCAGTCACT GAAATCTGAC
AGCAAACAAG CATCGCCTTT ACCAAAGCGA TATATTGTTA ATTTCAAAAG CAGTATTCAG
TCTGAAGGTG ATGAAATCAG TGGGCTTTCT TACGAAGCTG CTCAAAATGA GGTGCTTTCT
CAGCATAAGG CGTTGAACAG CGTTTCGGCT AAAGAGATGA AACGCATTGG TCGCAGTAAC
AGCTACACAG TGAAATTGGA TAAAGCAGGC ATCGACTCAC TCAAAAAACG TGGTGATGTT
GACTATGTCG AAGAGGATAT GCAGCGCCAT TTTCTCAGCG AAACCACTCC CTGGGGGCAA
ACCTACGTAG GTGCGACATC CTTAAGTGAC TCTCAGGCCG GTAACCGTAC TATCTGTATT
ATCGATTCAG GTTATGACCG CAGTCACAAT GACTTAAGTG GTAACAATGT CACCGGAACC
AATAATTCCG GTACGGGTAA CTGGTTCGAA CCGGGCAACC ATAATGCTCA CGGTACTCAT
GTAGCAGGTA CAATTGCGGC GATCGCCAAC AACGAAGGTG TTGTCGGTGT CATGCCGAAC
CAAAATGCCA ATATCCATGT AATTAAGGTA TTTAATGAGG CAGGTTGGGG TTACTCATCT
TCGCTGGTCT CTGCAGTCGA TACCTGTGTC GACAATGGCG CCAATGTTGT GACCATGAGT
TTAGGTGGTA GCAGTTCCAG TACCACAGAA AAAAATGCAT TAACCGCCCA TCAGGATAAC
GGTATCTTAC TCATCGCCGC TGCGGGTAAT GACGGAGATA ATACTCACAG TTATCCAGCC
TCTTATGATG CAGTGATGTC AGTTGCGGCG GTCGATAACA ACAAAGATCA TGCGGCGTTC
TCGCAGTACA CTAACCAAGT TGAAATTGCA GGCCCGGGTG AGGCGATTCT CTCAACCGTC
ACTCTCGGTG AGGGTCGTCT TGCCGATATC ACCATTGGTG GTCAGTCTTA CTTTGATAAC
GGCGTTGTCC CCCATAACCG TTACGTAAAG TCGGGCACAG ATCATGTGGC AACGCCGATT
AGTGGTAGCG TTATGGGCGA GCTTGCCGAG TGTTCTGTGT CAGGCAGTAC ATTTAACTGT
GGCGACATGA ACAGCAAAGT TTGTCTGGTC GAGCGTGTCG GTAACCAGGG AGCCGGTTAT
CCGGAGATCG ATGCCGTCAG AGCCTGTAAT AACGCTGGCG CGAGTGCTGT CATTGTCTAT
GGTAATCCCG CACTGCCCGG CCTTCAGAAC CCCTTCCTGG TCGATACCAA CAATGAAGCT
GCTATCGTAT CAGTATCGGT AGACAGGGCA ACGGGTCAGG CTCTTCAGGC CCAAGTAGGT
TCAACGGTGA CCGTTGAAAA TACTGCCAAC GAAGATTATG AATATTATAA CGGTACCTCT
ATGGCGACCC CTCATGTATC GGGCGTTGCC ACACTTGTCT GGAGTCATCA CACTGAGTGT
GGCGCAGCGC AAATACGTGC GGCACTTAAC GCGACTGCCG AAGATCTTGA AACGGCGGGC
CGTGATGATA AGACCGGTTA CGGCTTGATC GACGCCGTGG CAGCCGACAC CTATCTGGAT
GCTTCTTGTG ACGGACCGGT CGATCCCGGT ACTGGAACAG GAACCGGTGG TGCTGAGTTA
CAAAATGGCG TAACTAAAAC AGACTTAGCC GGAGCAAAGA ATGAAGAACT TCATTTCTCT
TTAGATGTTC CTGCTGGTGC GACAGACTTA AGCTTCACGA TGAGTGGTGG AAGCGGTGAT
GCCGATCTGT ATGTTCAATA TGGAGCAGCC CCGAGTACGA GTAGCTATGA CTGTCGTCCA
TGGAAAACAG GCAATAGTGA ATCTTGCCCT ATCACCACAA CGGAATCCGG AACTTACTAT
GTAATGGTTC AAGGCTATAG TGCATTTAGT GGTATCAATT TGGTCGCTAA CTATACTGAA
GCAACGGGTG GAAACACAGG CGGTGTGGCG AGCTACACCA ATACTAACAG CTACTCTATA
CCTGACAATA AAGCTGCAGG GATCAGCAGT CCAATATCTG TGAGCCGAAG TGGTGATGCA
GGCACGGTAT CTGTGACAGT CAACATCACC CACACCTATA TCGGTGATCT GCAGGTTGAA
CTTCATACTC CAAGCGGTGA AGTGGCTATC TTGCACGATA ACACGGGGAG CAGCACAGAT
AACATTAACC AGACCTACAC CGTCGATACC ACTGGCATAG AATCTGCCGG AGAGTGGAAG
TTAAAAGCGG TAGACAGTGG TCGCCGTGAT ACGGGTAGCA TCGACTCTTG GGAGATAAGC
TTCCAATAA
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| Protein sequence | MTVRQFTTSA LSLSVLAIAI SATVQAAPTF TQGIQSLKSD SKQASPLPKR YIVNFKSSIQ
SEGDEISGLS YEAAQNEVLS QHKALNSVSA KEMKRIGRSN SYTVKLDKAG IDSLKKRGDV
DYVEEDMQRH FLSETTPWGQ TYVGATSLSD SQAGNRTICI IDSGYDRSHN DLSGNNVTGT
NNSGTGNWFE PGNHNAHGTH VAGTIAAIAN NEGVVGVMPN QNANIHVIKV FNEAGWGYSS
SLVSAVDTCV DNGANVVTMS LGGSSSSTTE KNALTAHQDN GILLIAAAGN DGDNTHSYPA
SYDAVMSVAA VDNNKDHAAF SQYTNQVEIA GPGEAILSTV TLGEGRLADI TIGGQSYFDN
GVVPHNRYVK SGTDHVATPI SGSVMGELAE CSVSGSTFNC GDMNSKVCLV ERVGNQGAGY
PEIDAVRACN NAGASAVIVY GNPALPGLQN PFLVDTNNEA AIVSVSVDRA TGQALQAQVG
STVTVENTAN EDYEYYNGTS MATPHVSGVA TLVWSHHTEC GAAQIRAALN ATAEDLETAG
RDDKTGYGLI DAVAADTYLD ASCDGPVDPG TGTGTGGAEL QNGVTKTDLA GAKNEELHFS
LDVPAGATDL SFTMSGGSGD ADLYVQYGAA PSTSSYDCRP WKTGNSESCP ITTTESGTYY
VMVQGYSAFS GINLVANYTE ATGGNTGGVA SYTNTNSYSI PDNKAAGISS PISVSRSGDA
GTVSVTVNIT HTYIGDLQVE LHTPSGEVAI LHDNTGSSTD NINQTYTVDT TGIESAGEWK
LKAVDSGRRD TGSIDSWEIS FQ
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