| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1600 |
|---|
| Symbol | |
|---|
| ID | 5611767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1910178 |
|---|
| End bp | 1912295 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640932470 |
|---|
| Product | anaerobic ribonucleoside triphosphate reductase |
|---|
| Protein accession | YP_001473339 |
|---|
| Protein GI | 157374739 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02487] anaerobic ribonucleoside-triphosphate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGTGG TTATTAAGCG GGATGGTTAC CGCACGCCTT TTGACGAAAC AAGGATTAGA
GATGCTGTAT CGGCTGCAGC AAACTCGGCA GGTATTGATG ATAATGACTA TGCAACTCTA
GTGGCCAATA ATGTGGCTGA GAGCGTTGCC GATATGCCAG AAGTTGATAT TCATGACCTG
CAAGATGTCG TTGAAAATCA ACTGATGGAA GGACCCTATA AATCCCTTGC CCGGGTTTAT
ATTGAGTATC GTCATGACAG AGATCTTCAT CGCGAGACCA GCAGCCGGTT GAATCAAGAG
ATCAAAGGTT TGGTTGAGCA GAGCAATGCT GCCCTGCTTA ATGAAAATGC CAATAAAGAT
TCGAAAGTCA TCCCGACTCA ACGTGATCTG TTGGCCGGTA TTGTTGCAAA GCATTATGCA
ACTCGCCATA TATTACCCAA AGATGTGGTT GCGGCTCATG AGTCTGGTGA GATCCATTAT
CATGATTTGG ATTACGCGCC ATTTTTTCCT ATGTTCAACT GTATGTTGAT CGATCTTGCC
GGCATGTTGA CCAACGGCTT CAAGATGGGC AACGCCGAGA TTGAGACGCC TAAGTCTATC
TCGACAGCGA CCGCAGTGAC TGCACAGATC ATCGCTCAGG TGGCCAGCCA TATCTATGGT
GGAACCACGA TCAACCGCAT CGATGAAGTA TTATCGCCAT TTGTAGCCAA GAGTTACGAC
AAGCATTATC AGGTTGCACT GACCTGGGGG ATCACAGATG CAAAAGCATT TGCGACGACT
CAGACCGAAA AAGAGTGTCA CGATGCGTTC CAGTCTCTGG AATATGAAGT GAACACTTTG
CACACTGCAA ATGGCCAAAC TCCTTTTGTC ACCTTTGGTT TCGGACTCGG GACATCATGG
GAGTCTCGTT TAATTCAATC TTCTATGCTG AAGGTCCGCA TTGCCGGCTT GGGTAAGAAT
CGTAAGACCG CGGTATTCCC TAAGTTGGTT TTCGCCATTC GCGATGGTAT CAACCATAAA
GCAGGCGATT GTAACTACGA TATCAAGCGT CAGGCACTTA AGTGCGCCAG TACCCGCATG
TACCCGGATA TTCTTAACTA CGAGCAGGTA GAGAAGGTGA CCGGTTCATT CAAGACTCCT
ATGGGTTGTC GTAGCTTCCT CGGTACCTAC GAAGAAGAGG GGGAATTGGT GCATGAAGGG
CGTAACAACT TAGGTGTGGT GAGTCTTAAC TTACCTCGCG TAGCGCTTGA AGCTAATGGT
GATGAGGCTG AGTTTTACCG CATACTGGAT CAACGCTTGC TTATTGCCCG CAAAGCCTTA
GATACCCGTA TTGAACGTTT AGAAGGTGTA AAAGCCAGAG TGGCGCCCAT CCTTTATATG
GAAGGTGCAT GTGGTGTACG TTTACGCGCC GATGATGATA TCTCTACGAT TTTCAAAAAT
GGTCGTGCAT CAATCTCCTT AGGTTATATC GGGTTGCATG AAACTATCAA TGCATTGCAT
GGCACCGATA AGCACGTATA TGACTGCGAG ATATTGCGGG AAAAAGCGAT TGCGCTCGTT
GAGTATATGA AAGCGGCGAC AGTTAAGTGG AAAGATGAGA CCGGTTATGG TTTCAGCCTA
TACAGCACGC CGAGTGAAAA CTTGTGTAGT CGTTTCTGTA AGCTCGATAC TAAAATATTT
GGTGTCGTCG AAGGTGTGAC ACAGAAGGGT TATTACACCA ACAGCTTTCA CCTCGATGTT
GAAAAAGCGG TAAACCCGTA CGATAAACTT GACTTCGAAG TACCTTACCC AGCTATCGCT
AACGGTGGAT TTATCTGTTA CGGCGAATAT CCCAATATGC AGAACAATTT AGAAGCATTA
GAGGATGTTT GGGATTACAG CTACAGTCGT GTTCCTTACT ACGGGACAAA TACTCCCATT
GATGAGTGTT ACGATTGCGG CTTTACCGGT GAATTTGAGT GTACCAGTAA AGGCTTTACC
TGCCCTAAGT GTGGTAACCA TGAGCCAAGC CGGGTTTCTG TAACACGTCG TGTTTGTGGC
TATCTGGGAA GCCCAGATGC TCGACCATTT AACTATGGTA AGCAGGAAGA AGTTAAGCGA
CGAGTCAAGC ATCTTTAA
|
|---|
| Protein sequence | MPVVIKRDGY RTPFDETRIR DAVSAAANSA GIDDNDYATL VANNVAESVA DMPEVDIHDL
QDVVENQLME GPYKSLARVY IEYRHDRDLH RETSSRLNQE IKGLVEQSNA ALLNENANKD
SKVIPTQRDL LAGIVAKHYA TRHILPKDVV AAHESGEIHY HDLDYAPFFP MFNCMLIDLA
GMLTNGFKMG NAEIETPKSI STATAVTAQI IAQVASHIYG GTTINRIDEV LSPFVAKSYD
KHYQVALTWG ITDAKAFATT QTEKECHDAF QSLEYEVNTL HTANGQTPFV TFGFGLGTSW
ESRLIQSSML KVRIAGLGKN RKTAVFPKLV FAIRDGINHK AGDCNYDIKR QALKCASTRM
YPDILNYEQV EKVTGSFKTP MGCRSFLGTY EEEGELVHEG RNNLGVVSLN LPRVALEANG
DEAEFYRILD QRLLIARKAL DTRIERLEGV KARVAPILYM EGACGVRLRA DDDISTIFKN
GRASISLGYI GLHETINALH GTDKHVYDCE ILREKAIALV EYMKAATVKW KDETGYGFSL
YSTPSENLCS RFCKLDTKIF GVVEGVTQKG YYTNSFHLDV EKAVNPYDKL DFEVPYPAIA
NGGFICYGEY PNMQNNLEAL EDVWDYSYSR VPYYGTNTPI DECYDCGFTG EFECTSKGFT
CPKCGNHEPS RVSVTRRVCG YLGSPDARPF NYGKQEEVKR RVKHL
|
|---|
| |