| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1595 |
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| Symbol | |
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| ID | 5611761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1905177 |
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| End bp | 1906109 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640932465 |
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| Product | patatin |
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| Protein accession | YP_001473334 |
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| Protein GI | 157374734 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.613745 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACAA TTGGCATTGC ATTAGGTAGT GGCGCCGCAA AAGGCTGGGC ACATATAGGT
GTGCTAAAAG GACTCGCTGA GATGGGAATA AAGCCCGACA AAATCTCGGG TTGCTCGATA
GGGGCTCTCG TAGGGGCTGC CTATGCAAAC GATCAACTCG AGGAGCTTGA AGATTGGGTG
AGAGGCTTCT CCAGTTGGGA TGTGTTGGGG TTAATGGATG TGAGTTGGCG AAAGGGGGGC
TTAATCGGGG GAGATAAAGT CTTCGATGTT ATTCAAAATA GAATTGGCGA TCTACAGATC
GATGGCTTAC AGCGGCCGTT AATCGCCGTC GCTACGGATC TCTATTCCGG GCAAGAGATC
TGGTTTAAGG AGGGCGATCT TCGTCACGCT ATTCGCGCAT CGTGTTCTAT GCCTGGAATT
TTACCACCAG TGAAAGTCGG AGAGCGCTGG CTTGTCGATG GTGCGGTAGT TAATCCTGTG
CCTGTATCTG TTAGCAGGGC TATGGAGGTC GATGTGGTGA TTGCCGTCGA TCTCAATGGT
CAGGGAAGGG AGCGGTTACA GGTCTTGCCA GTGGACATGA CCAGTAATAA ACCTTCGGTA
GAAGACAAGG AGATAGCGCA AGCACATCAA GATACCGGCT TCATGGATCT GTTGGCGCGC
GGACGGGATT ATGTGACCAG CTTATCGGAT AAGTTCACTA TGGGTAATCG CTCCGATCCC
AGCATGTTGG CCGTGATGTC GCAATCGATG GATATTCTGG AGCAGCGTCA TAAACGTGCG
CGTCTGATGG GTGACCCGCC CGATATTTGC TTAGTCCCGG ATGTTGGCGA AATTGGTACA
ATGGAATTTC ATCGCGCCGA AGAAGCTATT GCGGCCGGAG AGGAGGCGGT GAGGCAGGCG
AAACATCAGA TAGAAGCTGT GTTGGGTCCC TAG
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| Protein sequence | MATIGIALGS GAAKGWAHIG VLKGLAEMGI KPDKISGCSI GALVGAAYAN DQLEELEDWV
RGFSSWDVLG LMDVSWRKGG LIGGDKVFDV IQNRIGDLQI DGLQRPLIAV ATDLYSGQEI
WFKEGDLRHA IRASCSMPGI LPPVKVGERW LVDGAVVNPV PVSVSRAMEV DVVIAVDLNG
QGRERLQVLP VDMTSNKPSV EDKEIAQAHQ DTGFMDLLAR GRDYVTSLSD KFTMGNRSDP
SMLAVMSQSM DILEQRHKRA RLMGDPPDIC LVPDVGEIGT MEFHRAEEAI AAGEEAVRQA
KHQIEAVLGP
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