| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1584 |
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| Symbol | |
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| ID | 5612359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1889375 |
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| End bp | 1890262 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932454 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001473323 |
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| Protein GI | 157374723 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.534905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATACCT CATTACCGCC ACTAAATTCA CTACTTGCCT TCGAATCGGC TTCGAGGCAC
CTGAGTTTTA CCAAGGCGGG TAGTGAACTT TTTGTCACAC ATGGCGCGAT AAGTAAGCAG
ATAAGAGGCT TAGAGGAGTA TCTGGGTGTT CCTCTTTTTT TAAGGCAACA CAGAAAGCTG
GTACTCACAG ATGAGGGGCT GCGTTATCTG CCGCAGATCC AGGCGGCGCT GCAAACCATC
AGCCATGCGA CCGATGAGAT TAAGTCACAA CAGATGCTGA CACAGAGTCT ATCAATTAAT
GTACTGCCCA GCCTGACGAT TAACTGGCTT ATCCCGAGGA TGGAGGAGTT TAAACAGCGC
TATCCCCATC TCTATGTCGA CCTGTCCATC GGTGACTTTG CCCTGGACTT TGACAAGAGT
CCCTGTGATA TAGCCATCAG AAGTGGCACT AAAGCCCCAC AAAACTGTAA TTTTATCAAG
TTGATGGATG AGGATCTCTG TCTGGTTTGC TCTCCTCAAA TAGCGACAAG GCTTAAAACT
CTGGATGATA TTAACCGGAT GACACTGCTA AAACACACGA CACGCCCGGA GCTTTGGCCC
TATTGGGCAG AAAGGGTCGG CCTGTCATTA ACCACGGATA AGAAGTTCGG CATGGAGCAC
TTTTACATGC TGAGTCAGGC GGCGGTTAGC GGCATGGGTG TGGCCTTGAT CCCTCGATTT
TTTATCGAGG AGCAACTGAC TGACGGAAGC TTAGTGATCC CCTTCGATTC GAGTTTTACC
AGCCCCTATA CCTATTATCT GCTGACGCCT AAGTCGAAGA ATCTTCCACT GAAAGCCAAG
GCCTTTATCG ACTGGCTGCT GGAAATATTT GCCCCCTATA GAAACTAG
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| Protein sequence | MHTSLPPLNS LLAFESASRH LSFTKAGSEL FVTHGAISKQ IRGLEEYLGV PLFLRQHRKL
VLTDEGLRYL PQIQAALQTI SHATDEIKSQ QMLTQSLSIN VLPSLTINWL IPRMEEFKQR
YPHLYVDLSI GDFALDFDKS PCDIAIRSGT KAPQNCNFIK LMDEDLCLVC SPQIATRLKT
LDDINRMTLL KHTTRPELWP YWAERVGLSL TTDKKFGMEH FYMLSQAAVS GMGVALIPRF
FIEEQLTDGS LVIPFDSSFT SPYTYYLLTP KSKNLPLKAK AFIDWLLEIF APYRN
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