| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1578 |
|---|
| Symbol | |
|---|
| ID | 5612465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1883416 |
|---|
| End bp | 1885266 |
|---|
| Gene Length | 1851 bp |
|---|
| Protein Length | 616 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640932448 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473317 |
|---|
| Protein GI | 157374717 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.222544 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.140348 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAG CTTTAATTGC GGTATCAATA GGATTGGTAC TAGGCCTAAC AGCTTGTTCA
GATAGTGAAA AAGCAACTGG GGTATCTGTT AATGCACAAG CGGAAATAGC ACAAAACAGC
CCAGTTAAAC AAGGTCAAGC TATTAAGAAT GAAGCTGTAG AGCAGGCTTA TTTAACCCTC
GTGGATAACT TCTTTAAAGA CTACCTTAAA CTTGAGCCTA TCTATGCGAC GTTTGTCGGT
GTTAACGATT ACAATGACCA GTTCGGTGGT GATCTGACCG ATGAGTACCT TAAAGCTCGC
CACGAGTTTA ATACCAGTTA CCTGAAACGT GTCGAACAGA TTGATAGAAG CCAGCTCTCT
CAAGATCTAC AGTTAAGCTA CGACATGTTT AGTTATGATC GAAATGTTGC CTTAGTCGAT
GAGACATTCC CGTCACGCTT TATGCCTATG AATCAGTTCT ACAGTACAGT GATAAGCATG
GTGCAACTTG GCAGTGGTGA AAGTGCTCAG CCTTTCAACA CAGTGGAAGA TTACGATAAC
TGGGCTTCAC GTCTCTCTGG TTTTATCAAC TGGACTAAGC TCGCACAAGC GCGAATGGAT
GAGGGGATAA GAAGTAAAGT TGTCCTGCCT CGTATCCTGG TTGAACGCAT TATTCCTCAG
CTCGAAGCAC AGTTGGTAAA CCAAGCCAGT GATAGTTTGT TTTACACTCC GGTGAACAAT
TTTCCGGAAA GTTTTACCCA AGCACAAAAA GATGAGATCA CAGTAAAGTA CACCCAATTG
ATAAATAAAG AGCTACTGCC GGCATTAACC TCATTGAAAG AATACTTCGC CATAACCTAC
TTGCCGGTTG CTCGAGCCAG CGATGGATGG TGGGGGTTGC CCAATGGTAA AGTTTGGTAT
CAGCACTTAG CTAACTCTCA CACGACGACC ACTATGTCAG TCGATGAGAT CCATCAAATT
GGTTTAAGTG AAGTCTCCCG TATTCTGTCT GAAATGGACA AAATTCGTCA GCAGGTAAAG
TTTGAAGGCG ATTTAACGGC ATTTTTTGCT TCATTGTCAT CTGAACCAAA GTATTTCTTC
AGTGAACGTC AGGGCTTGAT AGATGGCTAT ATGACACTTA AAGATAAGAT TAATGCTGAA
TTGCCTAAAT ACTTTAACGT TATGCCTGAG GCGGATTATG TCGTTAAACC TGTAGAGAGC
TTCAGGGAGC AATCCGCGGC GGGGGCCTCA TATGAATCGC CAGCGGTCGA TGGCTCACGT
CCGGGTGTGT TTTATATTAA TACGTACAAC CTAAAGGCAC AGCCTAAATG GGGGATGACG
ACGCTTTCTC TGCATGAGGC GGCACCAGGA CATCATTTCC AAATTGCCAT TAAGCAAGAG
CTTTCGGGGG TACCTGAGTT TCAACGATTC AGTGGCTATA CCGCTTTCGA AGAGGGCTGG
GCGCTTTATG CTGAATACTT AGGTATTGAG ATGGGGTTAT TTGAAGACCC TTATCAATAC
TTTGGTAAGT TATCCGATGA GATGCTTCGT GCCATGCGTC TGGTTGTCGA TACGGGACTC
CACGCTAAAG GCTGGACACG TGAGCAAGCC ATTCAGTATA TGAAAGACAA TTCGCCAATG
GCTGAGTCGG ACATCATTGC TGAAGTCGAG CGTTATATGG CCATTCCCGG TCAAGCCTTG
TCGTACAAAG TCGGTCAGTT AAAGATCTTG TCGTTGAGAG CCGAAGCAGA GGAAGCCTTG
GGGGATAAGT TTGACTTAAA GTCGTTCCAT GACCAAGTAT TGACTTCTGG TTCCCTGCCT
ATGGCCGTGA TGGAGATGAA GATCCATCAT TGGATTGAAA GTCAGAAATA A
|
|---|
| Protein sequence | MKRALIAVSI GLVLGLTACS DSEKATGVSV NAQAEIAQNS PVKQGQAIKN EAVEQAYLTL
VDNFFKDYLK LEPIYATFVG VNDYNDQFGG DLTDEYLKAR HEFNTSYLKR VEQIDRSQLS
QDLQLSYDMF SYDRNVALVD ETFPSRFMPM NQFYSTVISM VQLGSGESAQ PFNTVEDYDN
WASRLSGFIN WTKLAQARMD EGIRSKVVLP RILVERIIPQ LEAQLVNQAS DSLFYTPVNN
FPESFTQAQK DEITVKYTQL INKELLPALT SLKEYFAITY LPVARASDGW WGLPNGKVWY
QHLANSHTTT TMSVDEIHQI GLSEVSRILS EMDKIRQQVK FEGDLTAFFA SLSSEPKYFF
SERQGLIDGY MTLKDKINAE LPKYFNVMPE ADYVVKPVES FREQSAAGAS YESPAVDGSR
PGVFYINTYN LKAQPKWGMT TLSLHEAAPG HHFQIAIKQE LSGVPEFQRF SGYTAFEEGW
ALYAEYLGIE MGLFEDPYQY FGKLSDEMLR AMRLVVDTGL HAKGWTREQA IQYMKDNSPM
AESDIIAEVE RYMAIPGQAL SYKVGQLKIL SLRAEAEEAL GDKFDLKSFH DQVLTSGSLP
MAVMEMKIHH WIESQK
|
|---|
| |