Gene Ssed_1568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1568 
Symbol 
ID5612555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1871461 
End bp1872672 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content43% 
IMG OID640932438 
Productporin 
Protein accessionYP_001473307 
Protein GI157374707 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.03403e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.52354e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAAAGA CTCTAGTAGC ATCCGCATTA GCAGCCGTTA TATTTGTTCC GTCGGTATCG 
GCAATCGAGA TCTATAAAGA CGACAAAAAT GCCGTTGAGA TCGGTGGATG GATGGATGCG
CGCATCATCA ACACTCAAGG GGCTACAGAA GTGGTAAACG GTGCATCTCG CATCAATTTT
GGATTTACCC GTGAAATGAG CGATGGATGG AAAGCATTCA CAAAGCTCGA GTGGAGTGTT
AACCCGTTTG GAAACAGTGA CATTGAATAT AACAATGACA GTGCTTTTTC TTCTGAAAGT
GATGAATTTC TTCATAATCG TCTAGGTTAT GTCGGTCTTG GTCATGATAC ATACGGTAGC
CTGACAATAG GTAAGCAGTG GGGCGCTTGG TACGACGTAG TTTATAACAC TAACCTAGTG
AACACTTGGG ATGGTAACGC GTCAGGTACT TACACATATA ACAAAGCCGA TGGTGCTATT
AATGGTACTG GTCGTGGTGA CAACACCGTT CAATACCGTA ATGCATTTGG TGATGTTAGC
TTCGCTCTAC AGGTGCAATT AAAGCAAGAT AGCTTTGATT TGACAGAAAG CTCGCTGGAT
AATAATTCAA ACCCTTTCCC AACAGCTGAT AAAAACTTCA TGACTGGAAG CTCTACAGCT
TCTACTAGTG AAACTATTGC AACGGTTGAA TACAACAATA CCGTTGGTGG TTCTATCACT
TATGCCGCAA CAGATATGCT AACACTTACG GCTGGTTTCA ACTTAGGTGA ATTTGACGGT
ACCATGGCAT CGGGCGAAGG TATCTCTGAA ACAGATTACA TTTATGGTGC TGGTTTGACT
TGGGGTGGAT TTGAGCAACC AGGTTTCTAC GCTGCGATCA ACATCAACAA GAACGAGTTC
CATGATACAG ATAACATGGG CCGCTTGATG CACGACGCTG TAGGTCTTGA GTCACTGTTC
AGCTATAAGT TTGACAATGG CCTTAAGCCT ATCTTTGCTT ATAACTACCT CAAAGCTGGT
GACGCATACG AAGCATTTTA TAATGATGGC GAATTTAAGC GTCAGTTCAT CGTCGCTGGT
CTGCATTTTG TTTGGGACGA GCAAACAATG CTTTATATAG AAGCACGTAA AGATATGAGT
GAATTCAATG CTGGTAACCA AACTCCAGAT GAGAGTGATG GTGTTGCAAT TGGCATAAGA
TATTACCTGT AA
 
Protein sequence
MKKTLVASAL AAVIFVPSVS AIEIYKDDKN AVEIGGWMDA RIINTQGATE VVNGASRINF 
GFTREMSDGW KAFTKLEWSV NPFGNSDIEY NNDSAFSSES DEFLHNRLGY VGLGHDTYGS
LTIGKQWGAW YDVVYNTNLV NTWDGNASGT YTYNKADGAI NGTGRGDNTV QYRNAFGDVS
FALQVQLKQD SFDLTESSLD NNSNPFPTAD KNFMTGSSTA STSETIATVE YNNTVGGSIT
YAATDMLTLT AGFNLGEFDG TMASGEGISE TDYIYGAGLT WGGFEQPGFY AAININKNEF
HDTDNMGRLM HDAVGLESLF SYKFDNGLKP IFAYNYLKAG DAYEAFYNDG EFKRQFIVAG
LHFVWDEQTM LYIEARKDMS EFNAGNQTPD ESDGVAIGIR YYL