| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1552 |
|---|
| Symbol | |
|---|
| ID | 5612197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1852775 |
|---|
| End bp | 1854430 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640932421 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001473291 |
|---|
| Protein GI | 157374691 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000560356 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTTT TGATGAGAGT GCTGATAAAG CGTCTATCTG CCTACTCCAC AGCTGCATGC
ATCTTCTGCT TGCTTACCGG CTGTGGGCCG CAGTATGTTC CTCCGGGATT GGTTTATTGC
TCCGAGGGTA ACCCCGAGTC TTTCAACCCT CAACTTGTAA CCTCTGGTAC TACTATCGAT
GCTACCTCCC AGCAGATTTA CAATGGTTTG GTCGACTATA ATGCCACTTC CGGGCAGATC
ATTCCCTCTC TGGCAACACA GTGGCAGATA AGTGAAGATG AACTCACCTA CACCTTTCAA
TTGAGAAAAG GGGTTAAGTT TCATGACTCG GTTCGGTTCA CTCCTTCAAG AGCCTTTAAT
GCCGATGATG TGCTGTTCTC ATTCAACAGA ATTATCGATA CCAGCCACCC GTATCATGCC
GTCTCCAAAA CCGGTTATCC ATTTTTTCAA AGTATTGGTT TCGATAAACT GATAAACAAG
ATTGAAAAAA TATCAGACTA TGAAGTCGCC TTTCACCTTA ATAATAAAGA CGCGTCTTTT
CTTTCAAACT TAGCGGCCGG CTTTGCCATT ATTTTATCTG AAGAGTATGG CCAACTCCTC
ATTAAACAAT CCAGTGAAGA GACCATAGAC AGACTTCCAA TAGGCACGGG GCCGTTTAAA
TTTGTCCAAT ATGTGAAAAA TGAATATATT CGCTATCACA GGAATGAAAA GTATTGGCGT
TCACTTCCGC AAGCTGAACT CCTTGTCTTC GATATCACAC CCAAGAGCAC ATCCCGTCTG
GCAAAATTGA TCACCGGAGA CTGCACGGTT TCCGCACTTC CCAAGGCCGG AGAGTTGCCG
GTTGTACTTG AACATGAAGA GTTGAAAATT GACTCACAGC CCGGGTTTAA TGTGGCTTTC
TGGGCTTTTA ATACTCAAAA GCCTCCATTC GATGATGTCA GAGTGAGAAG AGCTTTAGCG
CACGCCGTAG ACAGAGACAA TATTCTCAGA GCCGTTTATC AAAAGACCGC CGTTGCTGCG
ACAGGCATGT TGCCTCCGAT GTCTTGGGCA TATTCAGAGA ATAAGAGCAT TATCGAATTC
AATCCACAAA AAGCTAAACA GCTTTTAGAG CAAGCCGGTG TCGAAAACTT AACTGTCGAT
ATTTGGGCCA TGCCCGTTGC CCGGATCTAC AATCCTAATG CCCATAAGAC AGCCGAGCTT
ATCCAGGCTG ATCTGGCTAA TATCGGGGTA AAAGTGAATA TCATCAGTTA TGACTGGAGC
GTGTTCAATC AGAAGTTAAG CCAGCGAAGT TATGACTCGG TTTTAATTGG TTGGAATGCC
GATAATAGCG ATCCAGATAA CTTTTTCACT CCTATTCTCA GCTGTTCGTC TGTCGCCTCT
AACAGTAACC GTTCACGTTG GTGCAGCCCT GAATTCGATA GTATTCTTGC CAAGGCAAGA
GCAACGACCT CTCGGGCTGA ACGAAAAATT CTCTATCAAC AAGCGGAAGC AATGTTTGCA
GATAAACTGC CTATGCTACC GTTCGCTCAT GCCACCCGAC TCGCATTTAA ACACAAAGAT
GTTAAACAAA GCCGATTGAC TCCTTTCGGA GGAATATCAT TTAGTGGTAA TGATAACGAT
GATATCAGCG ATGTTAATAT TGAGGTTAAG CACTAA
|
|---|
| Protein sequence | MIFLMRVLIK RLSAYSTAAC IFCLLTGCGP QYVPPGLVYC SEGNPESFNP QLVTSGTTID
ATSQQIYNGL VDYNATSGQI IPSLATQWQI SEDELTYTFQ LRKGVKFHDS VRFTPSRAFN
ADDVLFSFNR IIDTSHPYHA VSKTGYPFFQ SIGFDKLINK IEKISDYEVA FHLNNKDASF
LSNLAAGFAI ILSEEYGQLL IKQSSEETID RLPIGTGPFK FVQYVKNEYI RYHRNEKYWR
SLPQAELLVF DITPKSTSRL AKLITGDCTV SALPKAGELP VVLEHEELKI DSQPGFNVAF
WAFNTQKPPF DDVRVRRALA HAVDRDNILR AVYQKTAVAA TGMLPPMSWA YSENKSIIEF
NPQKAKQLLE QAGVENLTVD IWAMPVARIY NPNAHKTAEL IQADLANIGV KVNIISYDWS
VFNQKLSQRS YDSVLIGWNA DNSDPDNFFT PILSCSSVAS NSNRSRWCSP EFDSILAKAR
ATTSRAERKI LYQQAEAMFA DKLPMLPFAH ATRLAFKHKD VKQSRLTPFG GISFSGNDND
DISDVNIEVK H
|
|---|
| |