Gene Ssed_1545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1545 
Symbol 
ID5614154 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1845253 
End bp1847118 
Gene Length1866 bp 
Protein Length621 aa 
Translation table11 
GC content45% 
IMG OID640932414 
ProductPpiC-type peptidyl-prolyl cis-trans isomerase 
Protein accessionYP_001473284 
Protein GI157374684 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000368753 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00157323 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTAGAAA AGATTCGCGA AGGCTCACAG GGCGTGATTG CAAAAAGCAT TCTGGTTCTA 
GTAATACTTT CCTTTGCATT TACTGGCGTG AGTAGTTACC TAGGATCATC TACAGAGGCA
GCCGCTGCCA CCGTTAATGG TGAAGAGATC AGTGAATCAG CCTTAGAACA AGCCTATCAA
AATGAGCGCG CTCGTTTAGA GCAACAGCTA GGCGAGATGT TTGCAGCGTT ATCGGCTGAT
GAACGTTATC TATCGAGTGT AAAGCAAAGC GTTTTAGAGC GCCTTGTTGC AGAGAAATTA
TTAGATCAGA CCGCTACAGA CTTAGGTCTG CGAGTATCTG ATGCACAGAT CAAAAATGCC
ATCATGACAG AGCCTGCATT TCAAACTGAT GGTGTGTTCG ATAATGATAG ATATCAGGCT
ATCCTTCGAC AGCTTGGCTA CCAAGCGAAC TCGTTCAGAG ATATGATGCG CACCGATATG
ACTCGTCGTC AGCTGGTCGC TTCGTTAGTG GGCTCTGAAT TTGTACTTCC AGGTGAAGCA
AACTATCTTG CCGATATTCA AGGTCAGACT CGTGATATTC GCTACCATTG GGTTGATGCG
GCGCCTTTCA TCGCCGAAGC TGTTGTTACA GATGAACAGG CAAAATCATA TTACGATGCA
AATTTAGCCC AGTTTATGAG TCCTGAAACA TTGAGCCTTG AATATATTGA ACTCAATGCA
AAGGATATGG CTGCCGGAGT AACCGTTTCT GATGAAGAAG CTAAGACTTA TTATGATGAG
AATAAGCAGC AGTACCTAAA AGCTGAAAAG CGTTTAGCTG CGCATATTCT CGTTAGCCTT
GGTGACGATG ACTCTACAGC TAAGGCAAAG GCCAATGCAA TCTACGCTAA ATTACAAGCG
GGTGAAGAGT TCTCTGAATT AGCTAAAGCT GAATCTGAAG ATACTTTCAG TGGTGAGCAA
GGCGGTCAGT TAGACTGGTT TGAGCCTGGC GTCATGGAGC CAGCATTTGA CGAAGTGCTT
TATTCACTGT CTAAAGGTGA ATATTCAGCT GTCGTTAAAA CCAGCTTTGG CTACCACATC
ATCAAGCTAC TCGATGTTCA GCCTGCTGCT GAAGCGGCAT TTGAAGATGT GAAGAGTAAG
ATCCTTGCCC AGCTGAAAGA GAAGCAAGCA GTCGATCAGT ATTTTGGTCT GCAGCAGACT
CTTGCCGATG TGACTTATGA AGTTCCTGAT ACGTTAAGCG AAGCGGCGAC AGAGTTAGGT
ATTGAAGTTA AATCTACGCC TGTATTTTCT AGAAACAACG CACCTGCGCC ATTTGATAAC
CCTGAGGTAT TGAAGGCTGC ATTCTCGACT AACGTGTTGC TCGATCGCAT GAACAGTGAT
GTTATTGAGA TTGAAGCTAA CCACGCGATG GTTGTTCGCA TCAAGTCTCA TACCGCAGCC
GGTACCGTTG ATTTTGCTAA GGTTAAGTCT GCCATTGTTG AGCGTCTGCA ACAGGAGCAA
GCTAATGAGG TCGCACGGGC TAAGGCTCAA GAGTTAATGA CATCATTCAG TTCAGACTCT
GCAGGCATTG ATTTTATCAC CAAGACTAAA CTGGGTCGTT TCGACCAGGA GATCGATGGT
GCTATCGTCG GTAAGGCTTT CCAGATGGCT CAGCCAGCTG CTAGTGCAGT GGTTGATACC
GTTGCACTTG CTTCTGGTTA TGCGGTAGTC GTGCTCGATA AGGTTAATGC AGCAGAAGCT
ATCGATGACA ATATGTTGAG CTCTTTGAAG CAAAGATTAA GCTCGCAGTA TAGCGAAGGT
GACTACAGAG CACTTATCGC AACACTGAAA GCGAACGGTG AAGTGCTTTA CTCGTCGGCA
CAATAA
 
Protein sequence
MLEKIREGSQ GVIAKSILVL VILSFAFTGV SSYLGSSTEA AAATVNGEEI SESALEQAYQ 
NERARLEQQL GEMFAALSAD ERYLSSVKQS VLERLVAEKL LDQTATDLGL RVSDAQIKNA
IMTEPAFQTD GVFDNDRYQA ILRQLGYQAN SFRDMMRTDM TRRQLVASLV GSEFVLPGEA
NYLADIQGQT RDIRYHWVDA APFIAEAVVT DEQAKSYYDA NLAQFMSPET LSLEYIELNA
KDMAAGVTVS DEEAKTYYDE NKQQYLKAEK RLAAHILVSL GDDDSTAKAK ANAIYAKLQA
GEEFSELAKA ESEDTFSGEQ GGQLDWFEPG VMEPAFDEVL YSLSKGEYSA VVKTSFGYHI
IKLLDVQPAA EAAFEDVKSK ILAQLKEKQA VDQYFGLQQT LADVTYEVPD TLSEAATELG
IEVKSTPVFS RNNAPAPFDN PEVLKAAFST NVLLDRMNSD VIEIEANHAM VVRIKSHTAA
GTVDFAKVKS AIVERLQQEQ ANEVARAKAQ ELMTSFSSDS AGIDFITKTK LGRFDQEIDG
AIVGKAFQMA QPAASAVVDT VALASGYAVV VLDKVNAAEA IDDNMLSSLK QRLSSQYSEG
DYRALIATLK ANGEVLYSSA Q